miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 22059 0.72 0.633113
Target:  5'- gGGUucaGGGGCUCCGGCggggcucgagggGGCGCCGCg- -3'
miRNA:   3'- -CCA---UUUUGAGGUCGag----------CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 22797 0.67 0.88654
Target:  5'- gGGUugucGCggCCGGCggCGGCGCUGCc- -3'
miRNA:   3'- -CCAuuu-UGa-GGUCGa-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 25798 0.69 0.787748
Target:  5'- aGGaUGGAGCUCaGGCgccaucuggUGGCGCCGCg- -3'
miRNA:   3'- -CC-AUUUUGAGgUCGa--------GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 27510 0.66 0.934707
Target:  5'- aGGUcuGGGCgggCCAGCUgGGC-CCGCc- -3'
miRNA:   3'- -CCAu-UUUGa--GGUCGAgCCGcGGCGac -5'
23734 5' -54.7 NC_005261.1 + 27887 0.67 0.893407
Target:  5'- cGUA--AC-CCGGCgcgcaUCGGcCGCCGCUGc -3'
miRNA:   3'- cCAUuuUGaGGUCG-----AGCC-GCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 28872 0.68 0.856801
Target:  5'- -uUGAGGCUgCGGCgCGGaCGCCGCc- -3'
miRNA:   3'- ccAUUUUGAgGUCGaGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 29855 0.66 0.929544
Target:  5'- -----uGCUCgccggccgcgCGGCgcCGGCGCCGCUGc -3'
miRNA:   3'- ccauuuUGAG----------GUCGa-GCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 30142 0.7 0.759226
Target:  5'- cGGUGGAGCgcgcgcgCCuuagCGGCGCCGCg- -3'
miRNA:   3'- -CCAUUUUGa------GGucgaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 32171 0.68 0.864566
Target:  5'- cGGUGu-ACcuggCCuGCgggCGGCGCgCGCUGg -3'
miRNA:   3'- -CCAUuuUGa---GGuCGa--GCCGCG-GCGAC- -5'
23734 5' -54.7 NC_005261.1 + 35102 0.67 0.893407
Target:  5'- cGGUGAGcgGCgagccccCCAGCcgccggCGGCGUCGCa- -3'
miRNA:   3'- -CCAUUU--UGa------GGUCGa-----GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 36982 0.69 0.814969
Target:  5'- cGGUGcGGGCUCCAGC-CGGaGCCcgcggGCUGc -3'
miRNA:   3'- -CCAU-UUUGAGGUCGaGCCgCGG-----CGAC- -5'
23734 5' -54.7 NC_005261.1 + 42619 0.66 0.924134
Target:  5'- cGGcgcAAAgUCCAGCggggacUCGGcCGCCGCg- -3'
miRNA:   3'- -CCau-UUUgAGGUCG------AGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 43333 0.66 0.927947
Target:  5'- cGGUAcguAGACU--GGCUCgugugccuggggcuGGUGCCGCUGc -3'
miRNA:   3'- -CCAU---UUUGAggUCGAG--------------CCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 48433 0.67 0.88654
Target:  5'- cGGUAcAGCUCgCGGUgcgUGGCGCgGCc- -3'
miRNA:   3'- -CCAUuUUGAG-GUCGa--GCCGCGgCGac -5'
23734 5' -54.7 NC_005261.1 + 48804 0.66 0.934707
Target:  5'- cGUGAGGC-CguGCgCGGCGuCCGCg- -3'
miRNA:   3'- cCAUUUUGaGguCGaGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 49577 0.7 0.739614
Target:  5'- cGUGAAcacggGCUCgGgGCgcgCGGCGCUGCUGu -3'
miRNA:   3'- cCAUUU-----UGAGgU-CGa--GCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 50819 0.76 0.419771
Target:  5'- ---cGGGCUCCgcgcGGCUUGGCGCCGCg- -3'
miRNA:   3'- ccauUUUGAGG----UCGAGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 51764 0.68 0.872115
Target:  5'- cGUGAAGCUggcgCUGGC-CGGCGUCGCc- -3'
miRNA:   3'- cCAUUUUGA----GGUCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 52682 0.66 0.934707
Target:  5'- ---cGGGC-CCuGCUCGcgggcGCGCCGCUGc -3'
miRNA:   3'- ccauUUUGaGGuCGAGC-----CGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 53857 0.74 0.554592
Target:  5'- cGGcAAGcGCUCCAGCgCGGCGCgcgCGCUGu -3'
miRNA:   3'- -CCaUUU-UGAGGUCGaGCCGCG---GCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.