miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 53986 0.74 0.540386
Target:  5'- cGgcGAGCUCCAGCgcgcggcgcacaGGCGCCGCc- -3'
miRNA:   3'- cCauUUUGAGGUCGag----------CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 54307 0.67 0.906427
Target:  5'- cGGUuaacaccAGCUCCAGCaaGGCGUgGCc- -3'
miRNA:   3'- -CCAuu-----UUGAGGUCGagCCGCGgCGac -5'
23734 5' -54.7 NC_005261.1 + 54838 0.68 0.832273
Target:  5'- cGGgcAGGg-CUAGCUgcCGGCGCCGCa- -3'
miRNA:   3'- -CCauUUUgaGGUCGA--GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 56274 0.7 0.759226
Target:  5'- gGGU---ACUgCgAGCU-GGCGCCGCUGu -3'
miRNA:   3'- -CCAuuuUGA-GgUCGAgCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 56624 0.67 0.879441
Target:  5'- cGUGGAGCcccCCAGCgaccagacgCGGgGCgCGCUGg -3'
miRNA:   3'- cCAUUUUGa--GGUCGa--------GCCgCG-GCGAC- -5'
23734 5' -54.7 NC_005261.1 + 56843 0.7 0.749473
Target:  5'- cGGcAAGAC-CUGGUUCcuGGUGCCGCUGa -3'
miRNA:   3'- -CCaUUUUGaGGUCGAG--CCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 57331 0.7 0.739614
Target:  5'- ----cAGCUgCCAGC-CGGCGCCGUUc -3'
miRNA:   3'- ccauuUUGA-GGUCGaGCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 57409 0.66 0.934707
Target:  5'- cGUGA---UCCgcGGC-CGGCGCCGCg- -3'
miRNA:   3'- cCAUUuugAGG--UCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 57567 0.71 0.689058
Target:  5'- -----cGC-CCGGCUcCGGCGCCGCg- -3'
miRNA:   3'- ccauuuUGaGGUCGA-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 59002 0.66 0.929544
Target:  5'- cGGUGcgccGGGCUcgcCCAGC--GGCGCCGCc- -3'
miRNA:   3'- -CCAU----UUUGA---GGUCGagCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 59474 0.66 0.929544
Target:  5'- gGGggcAGCgCCGGCgCGGcCGCCGCg- -3'
miRNA:   3'- -CCauuUUGaGGUCGaGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 59796 0.69 0.814969
Target:  5'- cGgcGGGCggcaggCCGGCgUGGCGCCGCg- -3'
miRNA:   3'- cCauUUUGa-----GGUCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 60143 0.71 0.678763
Target:  5'- ---cGGGCUCCcaGGCgcugcaGGCGCCGCUGc -3'
miRNA:   3'- ccauUUUGAGG--UCGag----CCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 60328 0.66 0.912575
Target:  5'- aGGUGGAcga-CGGUguuugCGGCGCCGCg- -3'
miRNA:   3'- -CCAUUUugagGUCGa----GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 61529 0.71 0.689058
Target:  5'- cGGgccuuCUCCGGCaagcgccgCGGCGCCGCc- -3'
miRNA:   3'- -CCauuuuGAGGUCGa-------GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 62243 0.66 0.928482
Target:  5'- cGGUGcuGCacgUCCGGCgucaccugguagCGGCGcCCGUUGu -3'
miRNA:   3'- -CCAUuuUG---AGGUCGa-----------GCCGC-GGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 62985 0.66 0.924134
Target:  5'- aGUGGcccucCUCCAGCcggcccUCGGCGgCCGCg- -3'
miRNA:   3'- cCAUUuu---GAGGUCG------AGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 63270 0.66 0.929544
Target:  5'- --aGGGGCUguacaCCGGCgaGGCGCCGCUc -3'
miRNA:   3'- ccaUUUUGA-----GGUCGagCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 64022 0.67 0.905799
Target:  5'- aGGUGAGcguguucucgucgGCg-CGGCUCuGCGCCGCg- -3'
miRNA:   3'- -CCAUUU-------------UGagGUCGAGcCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 67797 0.7 0.759226
Target:  5'- ------cCUCCGcCUCGGCGCCGCc- -3'
miRNA:   3'- ccauuuuGAGGUcGAGCCGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.