miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 70368 0.68 0.864566
Target:  5'- cGGcgcgcCUCCA---CGGCGCCGCUGg -3'
miRNA:   3'- -CCauuuuGAGGUcgaGCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 70651 0.68 0.840648
Target:  5'- -----cGCUgaGGUUCGGCGCCGCg- -3'
miRNA:   3'- ccauuuUGAggUCGAGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 72899 0.77 0.384985
Target:  5'- gGGUAGAGCUCgCGGCacUUGaGCGCCGCa- -3'
miRNA:   3'- -CCAUUUUGAG-GUCG--AGC-CGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 77325 0.69 0.787748
Target:  5'- --cGGAGCUUCcGC-CGGCGCCGCc- -3'
miRNA:   3'- ccaUUUUGAGGuCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 77549 0.66 0.934707
Target:  5'- uGGUAcgGCgccgccgCCAGU--GGCGCCGCc- -3'
miRNA:   3'- -CCAUuuUGa------GGUCGagCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 78983 0.66 0.934707
Target:  5'- cGGgccuGCUCCAGCUUa--GCCGCg- -3'
miRNA:   3'- -CCauuuUGAGGUCGAGccgCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 80109 0.71 0.695213
Target:  5'- cGGUAccGGCUUgGGCgccgcggcagcggCGGCGCCGCUa -3'
miRNA:   3'- -CCAUu-UUGAGgUCGa------------GCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 82262 0.74 0.524304
Target:  5'- gGGUcuu-CUCCAGCUCc-CGCCGCUGg -3'
miRNA:   3'- -CCAuuuuGAGGUCGAGccGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 82340 0.66 0.924134
Target:  5'- cGUAGcGCUgCCGGCgcacgucggcgUCGGCGCgCGCg- -3'
miRNA:   3'- cCAUUuUGA-GGUCG-----------AGCCGCG-GCGac -5'
23734 5' -54.7 NC_005261.1 + 82942 0.67 0.879441
Target:  5'- cGUAAAg--CCAGCgCGGCGCCGg-- -3'
miRNA:   3'- cCAUUUugaGGUCGaGCCGCGGCgac -5'
23734 5' -54.7 NC_005261.1 + 83494 0.67 0.879441
Target:  5'- cGUAGAGCgCCAgGCgCGcGCGCCGgUGg -3'
miRNA:   3'- cCAUUUUGaGGU-CGaGC-CGCGGCgAC- -5'
23734 5' -54.7 NC_005261.1 + 84401 0.72 0.647675
Target:  5'- ---cGAGCUCCAGCUCGcGCagcaugucgGCCGCg- -3'
miRNA:   3'- ccauUUUGAGGUCGAGC-CG---------CGGCGac -5'
23734 5' -54.7 NC_005261.1 + 85114 0.72 0.647675
Target:  5'- uGUAAAACUgcgCCAGCUCGGC-CaCGUUGc -3'
miRNA:   3'- cCAUUUUGA---GGUCGAGCCGcG-GCGAC- -5'
23734 5' -54.7 NC_005261.1 + 85329 0.68 0.856801
Target:  5'- cGGUGGAACUgcuucaCCAGaaagcccagCGGC-CCGCUGa -3'
miRNA:   3'- -CCAUUUUGA------GGUCga-------GCCGcGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 85546 0.72 0.647675
Target:  5'- cGGgc-GGCUCCGuCUgCGGCGCCGCg- -3'
miRNA:   3'- -CCauuUUGAGGUcGA-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 86444 0.68 0.856801
Target:  5'- aGGUGguccagcgcGAACUCCuGGC-CcGCGCCGUUGa -3'
miRNA:   3'- -CCAU---------UUUGAGG-UCGaGcCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 86579 0.75 0.484956
Target:  5'- cGGUGGAAg-CCGGCggCGGCGCCGUc- -3'
miRNA:   3'- -CCAUUUUgaGGUCGa-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 87684 0.72 0.647675
Target:  5'- cGGUGAG--UCgCAGCUCcGCGCCGCa- -3'
miRNA:   3'- -CCAUUUugAG-GUCGAGcCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 89931 0.69 0.823711
Target:  5'- -cUGGAGCUgUCGGCggUGGCGCgGCUGg -3'
miRNA:   3'- ccAUUUUGA-GGUCGa-GCCGCGgCGAC- -5'
23734 5' -54.7 NC_005261.1 + 91171 0.67 0.902622
Target:  5'- cGGgcGgcAGCUCCcGCcgggcuucgcgcgcuUCGGCGCCguGCUGg -3'
miRNA:   3'- -CCauU--UUGAGGuCG---------------AGCCGCGG--CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.