miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 138215 0.76 0.428761
Target:  5'- aGGgcGGACggCGGCUCGGcCGCCGCg- -3'
miRNA:   3'- -CCauUUUGagGUCGAGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 137871 0.67 0.900037
Target:  5'- uGGU---GCUCCcggGGCcagCGGUGCCGCc- -3'
miRNA:   3'- -CCAuuuUGAGG---UCGa--GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 137015 0.68 0.872115
Target:  5'- cGG-AGAGCgcggCCAGCagaaCGGCGUCGgUGg -3'
miRNA:   3'- -CCaUUUUGa---GGUCGa---GCCGCGGCgAC- -5'
23734 5' -54.7 NC_005261.1 + 136485 0.69 0.814969
Target:  5'- cGGgcAgcAGCgagCAGCUCGGCGCCGaCg- -3'
miRNA:   3'- -CCauU--UUGag-GUCGAGCCGCGGC-Gac -5'
23734 5' -54.7 NC_005261.1 + 135764 0.76 0.419771
Target:  5'- cGGUGc-GCUCCGGCgcagagCGcGUGCCGCUGu -3'
miRNA:   3'- -CCAUuuUGAGGUCGa-----GC-CGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 134418 0.7 0.778373
Target:  5'- cGUGAAcugcuGCUCCAcGCUgcucgCGGgGCUGCUGg -3'
miRNA:   3'- cCAUUU-----UGAGGU-CGA-----GCCgCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 134357 0.67 0.900037
Target:  5'- -----cGCgccgCCGcGCggggggCGGCGCCGCUGg -3'
miRNA:   3'- ccauuuUGa---GGU-CGa-----GCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 134087 0.67 0.879441
Target:  5'- uGUGcGAGCUCuCGGCgcgcCGGCGCgCGCUc -3'
miRNA:   3'- cCAU-UUUGAG-GUCGa---GCCGCG-GCGAc -5'
23734 5' -54.7 NC_005261.1 + 130222 0.71 0.678763
Target:  5'- cGGaAGAGCgucggCCcGCUCaGGCGCCGCg- -3'
miRNA:   3'- -CCaUUUUGa----GGuCGAG-CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 127768 0.69 0.791458
Target:  5'- cGGgcgcgAAGACgcCCGGCUgcucgagcggcgggcCGGCGCCGCg- -3'
miRNA:   3'- -CCa----UUUUGa-GGUCGA---------------GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 126904 0.68 0.856801
Target:  5'- cGGgGAAGC-CCAGCUCGGU-CUGCa- -3'
miRNA:   3'- -CCaUUUUGaGGUCGAGCCGcGGCGac -5'
23734 5' -54.7 NC_005261.1 + 125755 0.68 0.840648
Target:  5'- gGGgccAGGGCUgCCgcgGGCUCGGCuaaggccaagGCCGCUGc -3'
miRNA:   3'- -CCa--UUUUGA-GG---UCGAGCCG----------CGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 125315 0.68 0.872115
Target:  5'- cGGgc--GCUCCgcGGcCUCGGCGuCCGCa- -3'
miRNA:   3'- -CCauuuUGAGG--UC-GAGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 124930 0.65 0.939142
Target:  5'- --gGAGGCUCCGccgcgcgcgcuguGC-CGGCGCC-CUGg -3'
miRNA:   3'- ccaUUUUGAGGU-------------CGaGCCGCGGcGAC- -5'
23734 5' -54.7 NC_005261.1 + 124250 0.68 0.848826
Target:  5'- cGGgcAGGCgCC-GCgCGGCGCCGCc- -3'
miRNA:   3'- -CCauUUUGaGGuCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 124063 0.68 0.856801
Target:  5'- aGGUAcAGCUCggccgacugCAGCcCGGCGcCCGCg- -3'
miRNA:   3'- -CCAUuUUGAG---------GUCGaGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 122725 0.68 0.872115
Target:  5'- cGUcGAugUUCAcgUCGGCGCCGCUc -3'
miRNA:   3'- cCAuUUugAGGUcgAGCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 120620 0.67 0.900037
Target:  5'- cGUGGGGCUCCuGCUggUGGCgGCC-CUGu -3'
miRNA:   3'- cCAUUUUGAGGuCGA--GCCG-CGGcGAC- -5'
23734 5' -54.7 NC_005261.1 + 120501 0.71 0.678763
Target:  5'- --------aCCGGCUaccCGGCGCCGCUGc -3'
miRNA:   3'- ccauuuugaGGUCGA---GCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 118902 0.7 0.759226
Target:  5'- uGGUGGccugcgucuGGgUCCGGCgccgcgggcgCGGCGCCGCg- -3'
miRNA:   3'- -CCAUU---------UUgAGGUCGa---------GCCGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.