miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 118120 0.66 0.924134
Target:  5'- -----uGCgccgCCGGCUC-GCGCCGCUc -3'
miRNA:   3'- ccauuuUGa---GGUCGAGcCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 113529 0.72 0.626871
Target:  5'- --cGAGGCcagCCGGCUCGGgGCCGUg- -3'
miRNA:   3'- ccaUUUUGa--GGUCGAGCCgCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 110225 0.68 0.864566
Target:  5'- cGGcGAcgcCUCCAGCgugggCGGCGCgGCg- -3'
miRNA:   3'- -CCaUUuu-GAGGUCGa----GCCGCGgCGac -5'
23734 5' -54.7 NC_005261.1 + 108726 0.74 0.554592
Target:  5'- --aAGAGCgcgcgggCCAGCggCGGCGCCGCg- -3'
miRNA:   3'- ccaUUUUGa------GGUCGa-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 108225 0.66 0.918478
Target:  5'- -----cGCUCCAGCaUGGCGCaCGUg- -3'
miRNA:   3'- ccauuuUGAGGUCGaGCCGCG-GCGac -5'
23734 5' -54.7 NC_005261.1 + 106960 0.72 0.616471
Target:  5'- cGGgcGcGCUCCGcCUCGGCGCgCGCg- -3'
miRNA:   3'- -CCauUuUGAGGUcGAGCCGCG-GCGac -5'
23734 5' -54.7 NC_005261.1 + 104811 0.66 0.912575
Target:  5'- gGGUcccGCUCC-GCagCGGCGUCGCg- -3'
miRNA:   3'- -CCAuuuUGAGGuCGa-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 103477 0.72 0.641436
Target:  5'- --cAGGGCgUCCAGCuggcgcaagacgucgUCGGCGCCGCg- -3'
miRNA:   3'- ccaUUUUG-AGGUCG---------------AGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 103346 0.72 0.631032
Target:  5'- cGGUAcAGCUCCgcgcgccgcucccccAGCUCGGCcgcgcgccGCCGCg- -3'
miRNA:   3'- -CCAUuUUGAGG---------------UCGAGCCG--------CGGCGac -5'
23734 5' -54.7 NC_005261.1 + 103274 0.68 0.848826
Target:  5'- -----cGCUCCAGCgcgccgGGUGCCGCg- -3'
miRNA:   3'- ccauuuUGAGGUCGag----CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 102381 0.68 0.848826
Target:  5'- -----cGCUCCAGCgCGGCGCgcaGCUc -3'
miRNA:   3'- ccauuuUGAGGUCGaGCCGCGg--CGAc -5'
23734 5' -54.7 NC_005261.1 + 98674 0.69 0.814969
Target:  5'- aGGgcGGGCUCC-GC-CGGgGCCGgaGg -3'
miRNA:   3'- -CCauUUUGAGGuCGaGCCgCGGCgaC- -5'
23734 5' -54.7 NC_005261.1 + 97748 0.66 0.924134
Target:  5'- --aGGGGCggggCgGGCUCGGCGgCGCg- -3'
miRNA:   3'- ccaUUUUGa---GgUCGAGCCGCgGCGac -5'
23734 5' -54.7 NC_005261.1 + 95644 0.66 0.929544
Target:  5'- uGGgcGAGCgCgAcGCgCGGCGCCGCg- -3'
miRNA:   3'- -CCauUUUGaGgU-CGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 95023 0.73 0.585376
Target:  5'- -aUAAAGCcgCCGccggcggcGCUCGGCGCCGCa- -3'
miRNA:   3'- ccAUUUUGa-GGU--------CGAGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 94700 0.66 0.929544
Target:  5'- --gAGGACguggCCgAGCUgGaGCGCCGCUa -3'
miRNA:   3'- ccaUUUUGa---GG-UCGAgC-CGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 92841 0.7 0.739614
Target:  5'- aGUccAGCUCCAGCUCccgGGCccgGCCGCa- -3'
miRNA:   3'- cCAuuUUGAGGUCGAG---CCG---CGGCGac -5'
23734 5' -54.7 NC_005261.1 + 92173 0.68 0.872115
Target:  5'- cGGUGGAGCcgCCgGGCcCGacgcCGCCGCUGg -3'
miRNA:   3'- -CCAUUUUGa-GG-UCGaGCc---GCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 91171 0.67 0.902622
Target:  5'- cGGgcGgcAGCUCCcGCcgggcuucgcgcgcuUCGGCGCCguGCUGg -3'
miRNA:   3'- -CCauU--UUGAGGuCG---------------AGCCGCGG--CGAC- -5'
23734 5' -54.7 NC_005261.1 + 89931 0.69 0.823711
Target:  5'- -cUGGAGCUgUCGGCggUGGCGCgGCUGg -3'
miRNA:   3'- ccAUUUUGA-GGUCGa-GCCGCGgCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.