miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 60143 0.71 0.678763
Target:  5'- ---cGGGCUCCcaGGCgcugcaGGCGCCGCUGc -3'
miRNA:   3'- ccauUUUGAGG--UCGag----CCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 85546 0.72 0.647675
Target:  5'- cGGgc-GGCUCCGuCUgCGGCGCCGCg- -3'
miRNA:   3'- -CCauuUUGAGGUcGA-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 108726 0.74 0.554592
Target:  5'- --aAGAGCgcgcgggCCAGCggCGGCGCCGCg- -3'
miRNA:   3'- ccaUUUUGa------GGUCGa-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 53986 0.74 0.540386
Target:  5'- cGgcGAGCUCCAGCgcgcggcgcacaGGCGCCGCc- -3'
miRNA:   3'- cCauUUUGAGGUCGag----------CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 82262 0.74 0.524304
Target:  5'- gGGUcuu-CUCCAGCUCc-CGCCGCUGg -3'
miRNA:   3'- -CCAuuuuGAGGUCGAGccGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 86579 0.75 0.484956
Target:  5'- cGGUGGAAg-CCGGCggCGGCGCCGUc- -3'
miRNA:   3'- -CCAUUUUgaGGUCGa-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 138215 0.76 0.428761
Target:  5'- aGGgcGGACggCGGCUCGGcCGCCGCg- -3'
miRNA:   3'- -CCauUUUGagGUCGAGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 544 0.76 0.428761
Target:  5'- aGGgcGGACggCGGCUCGGcCGCCGCg- -3'
miRNA:   3'- -CCauUUUGagGUCGAGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 50819 0.76 0.419771
Target:  5'- ---cGGGCUCCgcgcGGCUUGGCGCCGCg- -3'
miRNA:   3'- ccauUUUGAGG----UCGAGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 135764 0.76 0.419771
Target:  5'- cGGUGc-GCUCCGGCgcagagCGcGUGCCGCUGu -3'
miRNA:   3'- -CCAUuuUGAGGUCGa-----GC-CGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 53857 0.74 0.554592
Target:  5'- cGGcAAGcGCUCCAGCgCGGCGCgcgCGCUGu -3'
miRNA:   3'- -CCaUUU-UGAGGUCGaGCCGCG---GCGAC- -5'
23734 5' -54.7 NC_005261.1 + 95023 0.73 0.585376
Target:  5'- -aUAAAGCcgCCGccggcggcGCUCGGCGCCGCa- -3'
miRNA:   3'- ccAUUUUGa-GGU--------CGAGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 85114 0.72 0.647675
Target:  5'- uGUAAAACUgcgCCAGCUCGGC-CaCGUUGc -3'
miRNA:   3'- cCAUUUUGA---GGUCGAGCCGcG-GCGAC- -5'
23734 5' -54.7 NC_005261.1 + 87684 0.72 0.647675
Target:  5'- cGGUGAG--UCgCAGCUCcGCGCCGCa- -3'
miRNA:   3'- -CCAUUUugAG-GUCGAGcCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 84401 0.72 0.647675
Target:  5'- ---cGAGCUCCAGCUCGcGCagcaugucgGCCGCg- -3'
miRNA:   3'- ccauUUUGAGGUCGAGC-CG---------CGGCGac -5'
23734 5' -54.7 NC_005261.1 + 103477 0.72 0.641436
Target:  5'- --cAGGGCgUCCAGCuggcgcaagacgucgUCGGCGCCGCg- -3'
miRNA:   3'- ccaUUUUG-AGGUCG---------------AGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 22059 0.72 0.633113
Target:  5'- gGGUucaGGGGCUCCGGCggggcucgagggGGCGCCGCg- -3'
miRNA:   3'- -CCA---UUUUGAGGUCGag----------CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 103346 0.72 0.631032
Target:  5'- cGGUAcAGCUCCgcgcgccgcucccccAGCUCGGCcgcgcgccGCCGCg- -3'
miRNA:   3'- -CCAUuUUGAGG---------------UCGAGCCG--------CGGCGac -5'
23734 5' -54.7 NC_005261.1 + 113529 0.72 0.626871
Target:  5'- --cGAGGCcagCCGGCUCGGgGCCGUg- -3'
miRNA:   3'- ccaUUUUGa--GGUCGAGCCgCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 106960 0.72 0.616471
Target:  5'- cGGgcGcGCUCCGcCUCGGCGCgCGCg- -3'
miRNA:   3'- -CCauUuUGAGGUcGAGCCGCG-GCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.