Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23734 | 5' | -54.7 | NC_005261.1 | + | 60143 | 0.71 | 0.678763 |
Target: 5'- ---cGGGCUCCcaGGCgcugcaGGCGCCGCUGc -3' miRNA: 3'- ccauUUUGAGG--UCGag----CCGCGGCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 85546 | 0.72 | 0.647675 |
Target: 5'- cGGgc-GGCUCCGuCUgCGGCGCCGCg- -3' miRNA: 3'- -CCauuUUGAGGUcGA-GCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 108726 | 0.74 | 0.554592 |
Target: 5'- --aAGAGCgcgcgggCCAGCggCGGCGCCGCg- -3' miRNA: 3'- ccaUUUUGa------GGUCGa-GCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 53986 | 0.74 | 0.540386 |
Target: 5'- cGgcGAGCUCCAGCgcgcggcgcacaGGCGCCGCc- -3' miRNA: 3'- cCauUUUGAGGUCGag----------CCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 82262 | 0.74 | 0.524304 |
Target: 5'- gGGUcuu-CUCCAGCUCc-CGCCGCUGg -3' miRNA: 3'- -CCAuuuuGAGGUCGAGccGCGGCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 86579 | 0.75 | 0.484956 |
Target: 5'- cGGUGGAAg-CCGGCggCGGCGCCGUc- -3' miRNA: 3'- -CCAUUUUgaGGUCGa-GCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 138215 | 0.76 | 0.428761 |
Target: 5'- aGGgcGGACggCGGCUCGGcCGCCGCg- -3' miRNA: 3'- -CCauUUUGagGUCGAGCC-GCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 544 | 0.76 | 0.428761 |
Target: 5'- aGGgcGGACggCGGCUCGGcCGCCGCg- -3' miRNA: 3'- -CCauUUUGagGUCGAGCC-GCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 50819 | 0.76 | 0.419771 |
Target: 5'- ---cGGGCUCCgcgcGGCUUGGCGCCGCg- -3' miRNA: 3'- ccauUUUGAGG----UCGAGCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 135764 | 0.76 | 0.419771 |
Target: 5'- cGGUGc-GCUCCGGCgcagagCGcGUGCCGCUGu -3' miRNA: 3'- -CCAUuuUGAGGUCGa-----GC-CGCGGCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 53857 | 0.74 | 0.554592 |
Target: 5'- cGGcAAGcGCUCCAGCgCGGCGCgcgCGCUGu -3' miRNA: 3'- -CCaUUU-UGAGGUCGaGCCGCG---GCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 95023 | 0.73 | 0.585376 |
Target: 5'- -aUAAAGCcgCCGccggcggcGCUCGGCGCCGCa- -3' miRNA: 3'- ccAUUUUGa-GGU--------CGAGCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 85114 | 0.72 | 0.647675 |
Target: 5'- uGUAAAACUgcgCCAGCUCGGC-CaCGUUGc -3' miRNA: 3'- cCAUUUUGA---GGUCGAGCCGcG-GCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 87684 | 0.72 | 0.647675 |
Target: 5'- cGGUGAG--UCgCAGCUCcGCGCCGCa- -3' miRNA: 3'- -CCAUUUugAG-GUCGAGcCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 84401 | 0.72 | 0.647675 |
Target: 5'- ---cGAGCUCCAGCUCGcGCagcaugucgGCCGCg- -3' miRNA: 3'- ccauUUUGAGGUCGAGC-CG---------CGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 103477 | 0.72 | 0.641436 |
Target: 5'- --cAGGGCgUCCAGCuggcgcaagacgucgUCGGCGCCGCg- -3' miRNA: 3'- ccaUUUUG-AGGUCG---------------AGCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 22059 | 0.72 | 0.633113 |
Target: 5'- gGGUucaGGGGCUCCGGCggggcucgagggGGCGCCGCg- -3' miRNA: 3'- -CCA---UUUUGAGGUCGag----------CCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 103346 | 0.72 | 0.631032 |
Target: 5'- cGGUAcAGCUCCgcgcgccgcucccccAGCUCGGCcgcgcgccGCCGCg- -3' miRNA: 3'- -CCAUuUUGAGG---------------UCGAGCCG--------CGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 113529 | 0.72 | 0.626871 |
Target: 5'- --cGAGGCcagCCGGCUCGGgGCCGUg- -3' miRNA: 3'- ccaUUUUGa--GGUCGAGCCgCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 106960 | 0.72 | 0.616471 |
Target: 5'- cGGgcGcGCUCCGcCUCGGCGCgCGCg- -3' miRNA: 3'- -CCauUuUGAGGUcGAGCCGCG-GCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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