miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 3' -66.3 NC_005261.1 + 107076 0.66 0.42021
Target:  5'- cCCGGGCaCCGGcGCgaaGUGGCAGuCGAa- -3'
miRNA:   3'- -GGCCCG-GGUC-CGgg-CGCCGUC-GCUcu -5'
23735 3' -66.3 NC_005261.1 + 68580 0.66 0.428495
Target:  5'- gUCGccGCCgAGGCgggCCGCGGgAGCGGGGc -3'
miRNA:   3'- -GGCc-CGGgUCCG---GGCGCCgUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 38541 0.66 0.42021
Target:  5'- gCCGGGCaCAGcGCCgGCGcGCGGCc--- -3'
miRNA:   3'- -GGCCCGgGUC-CGGgCGC-CGUCGcucu -5'
23735 3' -66.3 NC_005261.1 + 26120 0.66 0.42021
Target:  5'- gCCGGGUaagCAGGCgCGCGGUA-CGAu- -3'
miRNA:   3'- -GGCCCGg--GUCCGgGCGCCGUcGCUcu -5'
23735 3' -66.3 NC_005261.1 + 43396 0.66 0.412023
Target:  5'- gCCGGcaccGUCCAGGCgCCggggGCGGCcuccgccgccGGCGGGGa -3'
miRNA:   3'- -GGCC----CGGGUCCG-GG----CGCCG----------UCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 48649 0.66 0.42021
Target:  5'- gCCGGcccccGCCCGGagaGCCgCGCGGCAacgGCGAc- -3'
miRNA:   3'- -GGCC-----CGGGUC---CGG-GCGCCGU---CGCUcu -5'
23735 3' -66.3 NC_005261.1 + 90768 0.66 0.462567
Target:  5'- cCCGaGGCCgCcgAGGCCgcUGCGGCGGCcGGc -3'
miRNA:   3'- -GGC-CCGG-G--UCCGG--GCGCCGUCGcUCu -5'
23735 3' -66.3 NC_005261.1 + 31295 0.66 0.427662
Target:  5'- aUCGcGGCCCgccgccgcgcgGGGCCCGCGGgcgcgcucgccgcCAGCGc-- -3'
miRNA:   3'- -GGC-CCGGG-----------UCCGGGCGCC-------------GUCGCucu -5'
23735 3' -66.3 NC_005261.1 + 108174 0.66 0.412023
Target:  5'- gCCaGGGCgCGcGG-CCGCGGCuccgggcGCGAGAg -3'
miRNA:   3'- -GG-CCCGgGU-CCgGGCGCCGu------CGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 71799 0.66 0.428495
Target:  5'- gCGcGGCCC-GGCCCGUGGggacgUAG-GAGAc -3'
miRNA:   3'- gGC-CCGGGuCCGGGCGCC-----GUCgCUCU- -5'
23735 3' -66.3 NC_005261.1 + 88785 0.66 0.419387
Target:  5'- cCCuGGCCgCcGGCgCCGCgcagcaggacgccGGCGGCGGGGc -3'
miRNA:   3'- -GGcCCGG-GuCCG-GGCG-------------CCGUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 106574 0.66 0.428495
Target:  5'- gCCGGcCCCGGGgCCGCcGcGCGGCGc-- -3'
miRNA:   3'- -GGCCcGGGUCCgGGCG-C-CGUCGCucu -5'
23735 3' -66.3 NC_005261.1 + 121848 0.66 0.428495
Target:  5'- aCCGGcGCCagcaGCCCGCGGCucccGcCGAGc -3'
miRNA:   3'- -GGCC-CGGguc-CGGGCGCCGu---C-GCUCu -5'
23735 3' -66.3 NC_005261.1 + 63599 0.66 0.42021
Target:  5'- gCgGGGCCCuguGGCCggaUGCGGCucccAGCGuuGAc -3'
miRNA:   3'- -GgCCCGGGu--CCGG---GCGCCG----UCGCu-CU- -5'
23735 3' -66.3 NC_005261.1 + 103553 0.66 0.412023
Target:  5'- cCCGGGCCCAGGggcCCCGUGccGCcGCc--- -3'
miRNA:   3'- -GGCCCGGGUCC---GGGCGC--CGuCGcucu -5'
23735 3' -66.3 NC_005261.1 + 93471 0.66 0.412023
Target:  5'- gCGGuGCCgGGGCgCGCGucgcccGCGGCGAa- -3'
miRNA:   3'- gGCC-CGGgUCCGgGCGC------CGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 19947 0.66 0.41121
Target:  5'- cCUGGGCggGGGUggggcggccucggCUGCGGCAGCGAc- -3'
miRNA:   3'- -GGCCCGggUCCG-------------GGCGCCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 43810 0.66 0.427662
Target:  5'- -gGGGCgCCGGGCgcgcccuCCGUGGagaagcugcuCGGCGAGGg -3'
miRNA:   3'- ggCCCG-GGUCCG-------GGCGCC----------GUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 83024 0.66 0.428495
Target:  5'- gCCGGcGCCCccgggAGGgCCGCucGCcGCGGGAg -3'
miRNA:   3'- -GGCC-CGGG-----UCCgGGCGc-CGuCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 20637 0.66 0.412023
Target:  5'- gCC-GGCCCGGuucgccGCCCgcaccgccggugGCGGCAGCGgcAGAg -3'
miRNA:   3'- -GGcCCGGGUC------CGGG------------CGCCGUCGC--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.