miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 3' -66.3 NC_005261.1 + 60 0.67 0.37261
Target:  5'- -gGGGCCgaaauCGGcGCgCGCGGgGGCGGGGu -3'
miRNA:   3'- ggCCCGG-----GUC-CGgGCGCCgUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 104 0.71 0.210813
Target:  5'- cCCGGGCCCcgccGCCCGCGcCGGCGc-- -3'
miRNA:   3'- -GGCCCGGGuc--CGGGCGCcGUCGCucu -5'
23735 3' -66.3 NC_005261.1 + 232 0.77 0.077917
Target:  5'- gCGGGCCCcgcgagcGGGCCCggcuGCGGCGGCGGc- -3'
miRNA:   3'- gGCCCGGG-------UCCGGG----CGCCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 348 0.68 0.328812
Target:  5'- cCCGcaGCCCGgcgcGGCCCgGCGGCGGUGGc- -3'
miRNA:   3'- -GGCc-CGGGU----CCGGG-CGCCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 1188 0.73 0.159007
Target:  5'- gCCGGGgCCGGGgCCGgGcGCGGCGcGGAc -3'
miRNA:   3'- -GGCCCgGGUCCgGGCgC-CGUCGC-UCU- -5'
23735 3' -66.3 NC_005261.1 + 1280 0.76 0.096279
Target:  5'- gCCGGcGCCCAGGCCgGCggggcucccgucgccGGCGGCGGc- -3'
miRNA:   3'- -GGCC-CGGGUCCGGgCG---------------CCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 1396 0.81 0.040463
Target:  5'- gCCGGGCgCCGcGGCCgCgGCGGCGGCGGGGg -3'
miRNA:   3'- -GGCCCG-GGU-CCGG-G-CGCCGUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 1746 0.74 0.131149
Target:  5'- gCGGGCCCAGGCgCGUGGCcaccguguAGCGc-- -3'
miRNA:   3'- gGCCCGGGUCCGgGCGCCG--------UCGCucu -5'
23735 3' -66.3 NC_005261.1 + 2165 0.67 0.395949
Target:  5'- aCCcGGCCCAGGCgUGCGaGuCGGCGc-- -3'
miRNA:   3'- -GGcCCGGGUCCGgGCGC-C-GUCGCucu -5'
23735 3' -66.3 NC_005261.1 + 2201 0.7 0.258688
Target:  5'- gCCGGuuGCCCAGcGCCgcgaGCaGguGCGAGAg -3'
miRNA:   3'- -GGCC--CGGGUC-CGGg---CGcCguCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 2280 0.67 0.395156
Target:  5'- gCCGGGCggcgccgCCAGcgccucCCCG-GGCAGCGGGu -3'
miRNA:   3'- -GGCCCG-------GGUCc-----GGGCgCCGUCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 2405 0.73 0.155253
Target:  5'- gCGcGCCCgcGGGCCCcgcGCGGCGGCGGGc -3'
miRNA:   3'- gGCcCGGG--UCCGGG---CGCCGUCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 2473 0.71 0.210813
Target:  5'- gCCGGGCgCCAgGGCUCGgGGaagAGCGGGu -3'
miRNA:   3'- -GGCCCG-GGU-CCGGGCgCCg--UCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 2583 0.68 0.335841
Target:  5'- cCCGGGCggcaCGcGGCggaagccgCCGuCGGCGGCGGGGc -3'
miRNA:   3'- -GGCCCGg---GU-CCG--------GGC-GCCGUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 2625 0.66 0.436875
Target:  5'- gCCGGGCggcaUgGGGCCCaGCacgcgggcgGGCAGCGGc- -3'
miRNA:   3'- -GGCCCG----GgUCCGGG-CG---------CCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 2713 0.71 0.231077
Target:  5'- gCCGGGCCCcuGGCCCcggccgacuuGCGcuugcgccGCGGCGGGc -3'
miRNA:   3'- -GGCCCGGGu-CCGGG----------CGC--------CGUCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 2766 0.68 0.315083
Target:  5'- gCGGGCCUcgAGGCCCGCccccgaggGGCugccgccggcGGcCGGGAg -3'
miRNA:   3'- gGCCCGGG--UCCGGGCG--------CCG----------UC-GCUCU- -5'
23735 3' -66.3 NC_005261.1 + 2950 0.68 0.357579
Target:  5'- gCCGGGCUCcGGCCCGgacuagGGCccgGGCuGAGGc -3'
miRNA:   3'- -GGCCCGGGuCCGGGCg-----CCG---UCG-CUCU- -5'
23735 3' -66.3 NC_005261.1 + 3146 0.67 0.37261
Target:  5'- cCCGuccccGUCCgAGGCCCcgGCGGCGGCGGc- -3'
miRNA:   3'- -GGCc----CGGG-UCCGGG--CGCCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 3672 0.72 0.183299
Target:  5'- gCCGcGGCCgGcaggccgcGGCCCGCuGCAGcCGAGAg -3'
miRNA:   3'- -GGC-CCGGgU--------CCGGGCGcCGUC-GCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.