miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 3' -66.3 NC_005261.1 + 72169 0.66 0.445349
Target:  5'- uCCGGGauCCCGGcGUCCGagacguuGGCGGCGGc- -3'
miRNA:   3'- -GGCCC--GGGUC-CGGGCg------CCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 99781 0.66 0.445349
Target:  5'- -gGcGGCCCGGGUCCcagucGCGGC-GCG-GAu -3'
miRNA:   3'- ggC-CCGGGUCCGGG-----CGCCGuCGCuCU- -5'
23735 3' -66.3 NC_005261.1 + 84554 0.66 0.445349
Target:  5'- gCGGGCCCAGcGCCUGgagcaCGGCccCGuAGAc -3'
miRNA:   3'- gGCCCGGGUC-CGGGC-----GCCGucGC-UCU- -5'
23735 3' -66.3 NC_005261.1 + 95626 0.66 0.445349
Target:  5'- gCGcGGUCCAGGa--GCGGCugGGCGAGc -3'
miRNA:   3'- gGC-CCGGGUCCgggCGCCG--UCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 103048 0.66 0.445349
Target:  5'- -aGGGCCCAGcGCCUGUcccGGCacGGCGc-- -3'
miRNA:   3'- ggCCCGGGUC-CGGGCG---CCG--UCGCucu -5'
23735 3' -66.3 NC_005261.1 + 128092 0.66 0.445349
Target:  5'- gCGGGUuaaCGGGCgaGCGGCGcggcGCGGGGu -3'
miRNA:   3'- gGCCCGg--GUCCGggCGCCGU----CGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 126871 0.66 0.445349
Target:  5'- aCCGc-UCCAuGGCCCGCaGCAGCGcAGGg -3'
miRNA:   3'- -GGCccGGGU-CCGGGCGcCGUCGC-UCU- -5'
23735 3' -66.3 NC_005261.1 + 134563 0.66 0.445349
Target:  5'- gCUGGGC---GGCgCCGCGGCuGCGcAGGg -3'
miRNA:   3'- -GGCCCGgguCCG-GGCGCCGuCGC-UCU- -5'
23735 3' -66.3 NC_005261.1 + 35593 0.66 0.436875
Target:  5'- cCCGGaccccagcGCCC-GGCCCcgccGCGGCAGCc--- -3'
miRNA:   3'- -GGCC--------CGGGuCCGGG----CGCCGUCGcucu -5'
23735 3' -66.3 NC_005261.1 + 47689 0.66 0.436875
Target:  5'- aCGGccGCCCGcGGCgCCGCgucGGCGGCGucGGGg -3'
miRNA:   3'- gGCC--CGGGU-CCG-GGCG---CCGUCGC--UCU- -5'
23735 3' -66.3 NC_005261.1 + 15435 0.66 0.436875
Target:  5'- gCCGGGCgCGGGCCgGCGau-G-GAGAa -3'
miRNA:   3'- -GGCCCGgGUCCGGgCGCcguCgCUCU- -5'
23735 3' -66.3 NC_005261.1 + 2625 0.66 0.436875
Target:  5'- gCCGGGCggcaUgGGGCCCaGCacgcgggcgGGCAGCGGc- -3'
miRNA:   3'- -GGCCCG----GgUCCGGG-CG---------CCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 62811 0.66 0.436875
Target:  5'- gCUGGGCCauaucGCCgCGCGGggcacCGGCGGGGg -3'
miRNA:   3'- -GGCCCGGguc--CGG-GCGCC-----GUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 63778 0.66 0.436875
Target:  5'- gCCGaGGUCCAcguGcGCgCGCGGCuGCGuGAg -3'
miRNA:   3'- -GGC-CCGGGU---C-CGgGCGCCGuCGCuCU- -5'
23735 3' -66.3 NC_005261.1 + 117768 0.66 0.436875
Target:  5'- cUCGGGUCCGGa-UCGgGGCGGgGAGGa -3'
miRNA:   3'- -GGCCCGGGUCcgGGCgCCGUCgCUCU- -5'
23735 3' -66.3 NC_005261.1 + 68112 0.66 0.436875
Target:  5'- uUCGGGCUggagcugcgCGGG-CCGCGGCgcGGCGAc- -3'
miRNA:   3'- -GGCCCGG---------GUCCgGGCGCCG--UCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 107137 0.66 0.436875
Target:  5'- aCGGcGCCCAcGG-CCGCGGCcauggaGGCGGc- -3'
miRNA:   3'- gGCC-CGGGU-CCgGGCGCCG------UCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 8529 0.66 0.434351
Target:  5'- gCGaGGCCCAGGCCCacgugauccaacccGCucGGCcgccccgggaAGUGAGGa -3'
miRNA:   3'- gGC-CCGGGUCCGGG--------------CG--CCG----------UCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 44921 0.66 0.434351
Target:  5'- gCCGGGCCCAGcCgCCGaggagaguuCGGCGcuggagagccugcuGCGGGAc -3'
miRNA:   3'- -GGCCCGGGUCcG-GGC---------GCCGU--------------CGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 97018 0.66 0.431836
Target:  5'- gCGGGCCguCGGGCgCGCccGGCcgcccacauccacagGGCGGGGg -3'
miRNA:   3'- gGCCCGG--GUCCGgGCG--CCG---------------UCGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.