miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 3' -66.3 NC_005261.1 + 90768 0.66 0.462567
Target:  5'- cCCGaGGCCgCcgAGGCCgcUGCGGCGGCcGGc -3'
miRNA:   3'- -GGC-CCGG-G--UCCGG--GCGCCGUCGcUCu -5'
23735 3' -66.3 NC_005261.1 + 21811 0.81 0.043569
Target:  5'- gCCGGG-CCGGGCCCGCGGCgggcgcgcgugcgGGCGGGc -3'
miRNA:   3'- -GGCCCgGGUCCGGGCGCCG-------------UCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 23455 0.86 0.01778
Target:  5'- -aGGGCagaaggcgCCAGGCCCGCGGCGGCGAGu -3'
miRNA:   3'- ggCCCG--------GGUCCGGGCGCCGUCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 29889 0.84 0.025508
Target:  5'- gCCaGcGCCCGGGCCCGCGGCAGCGcgcGAg -3'
miRNA:   3'- -GGcC-CGGGUCCGGGCGCCGUCGCu--CU- -5'
23735 3' -66.3 NC_005261.1 + 33759 0.84 0.027482
Target:  5'- gCCGGGCCCgcucgcgGGGCCCGCGGCgAGCGcuGGGc -3'
miRNA:   3'- -GGCCCGGG-------UCCGGGCGCCG-UCGC--UCU- -5'
23735 3' -66.3 NC_005261.1 + 48321 0.83 0.029006
Target:  5'- gUCGGGCCCGGGCUcgggggCGCGcGCGGCGAGGc -3'
miRNA:   3'- -GGCCCGGGUCCGG------GCGC-CGUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 121192 0.82 0.033831
Target:  5'- gCCGGGgCCGGGCCCGgGGCcGCGGGc -3'
miRNA:   3'- -GGCCCgGGUCCGGGCgCCGuCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 135016 0.82 0.034708
Target:  5'- gCGGGCCCGcacgcGG-CCGCGGCGGCGAGGc -3'
miRNA:   3'- gGCCCGGGU-----CCgGGCGCCGUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 3831 0.82 0.037477
Target:  5'- gCGGGCCCGGGCgCUgGCGGCAGCGGc- -3'
miRNA:   3'- gGCCCGGGUCCG-GG-CGCCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 90112 0.82 0.037477
Target:  5'- gCUGGGCCgAcgcGGCCCGCGGCgagGGCGAGGa -3'
miRNA:   3'- -GGCCCGGgU---CCGGGCGCCG---UCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 1396 0.81 0.040463
Target:  5'- gCCGGGCgCCGcGGCCgCgGCGGCGGCGGGGg -3'
miRNA:   3'- -GGCCCG-GGU-CCGG-G-CGCCGUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 71620 0.88 0.012062
Target:  5'- cCCGGGCgCGGGCCCG-GGCGGCGGGAa -3'
miRNA:   3'- -GGCCCGgGUCCGGGCgCCGUCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 71428 0.8 0.047147
Target:  5'- gCCcGGCCCGGGCCCGCGGC-GCGcAGc -3'
miRNA:   3'- -GGcCCGGGUCCGGGCGCCGuCGC-UCu -5'
23735 3' -66.3 NC_005261.1 + 33481 0.78 0.065359
Target:  5'- gCCGGGCCCgcucgcgGGGCCCGCgagcaccaggGGCGGCGGc- -3'
miRNA:   3'- -GGCCCGGG-------UCCGGGCG----------CCGUCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 128796 0.78 0.065524
Target:  5'- -gGGcGCCCGGGCCCGCGGCGGgGc-- -3'
miRNA:   3'- ggCC-CGGGUCCGGGCGCCGUCgCucu -5'
23735 3' -66.3 NC_005261.1 + 127798 0.78 0.067194
Target:  5'- gCGGGCC--GGCgCCGCGGCGGCGGGc -3'
miRNA:   3'- gGCCCGGguCCG-GGCGCCGUCGCUCu -5'
23735 3' -66.3 NC_005261.1 + 48051 0.78 0.068733
Target:  5'- gCGcGGUCgGGGCCCGCGGCccacgccgaguacAGCGAGAc -3'
miRNA:   3'- gGC-CCGGgUCCGGGCGCCG-------------UCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 113310 0.78 0.072456
Target:  5'- gCGGGCCUGGGCCCgGCuGC-GCGAGAa -3'
miRNA:   3'- gGCCCGGGUCCGGG-CGcCGuCGCUCU- -5'
23735 3' -66.3 NC_005261.1 + 63025 0.78 0.072456
Target:  5'- gCGGGCgCCGGcGCCCGCGGCgaGGCGGu- -3'
miRNA:   3'- gGCCCG-GGUC-CGGGCGCCG--UCGCUcu -5'
23735 3' -66.3 NC_005261.1 + 135085 0.77 0.076181
Target:  5'- gCGGGCUCGcGGCCCgGCGGCGgagcGCGAGGc -3'
miRNA:   3'- gGCCCGGGU-CCGGG-CGCCGU----CGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.