miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 72822 0.68 0.922976
Target:  5'- aCCUCGagGGCCGcaaggCGGuCGGCcaGGGCg -3'
miRNA:   3'- -GGAGCa-UCGGCa----GCUuGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 121781 0.68 0.922976
Target:  5'- ---gGUGGCCG-CGGcCGGCGggcUGGGCa -3'
miRNA:   3'- ggagCAUCGGCaGCUuGCCGU---ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 24381 0.68 0.922976
Target:  5'- uCC-CGgugGGCuCGUCG-GCGGCG-GGGCg -3'
miRNA:   3'- -GGaGCa--UCG-GCAGCuUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 13377 0.68 0.927865
Target:  5'- gCUCGUacAGCCGgcuguacgcggucUCgGAGCGGUA-GGGCg -3'
miRNA:   3'- gGAGCA--UCGGC-------------AG-CUUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 101674 0.68 0.928396
Target:  5'- gCCUCGUaggccgAGCCGgCGAAgcgGGCGUGgucgaAGCg -3'
miRNA:   3'- -GGAGCA------UCGGCaGCUUg--CCGUAC-----UCG- -5'
23735 5' -53.5 NC_005261.1 + 31474 0.68 0.928396
Target:  5'- gCCUgaGUGGCCGcCGGugcGCGGC--GGGCu -3'
miRNA:   3'- -GGAg-CAUCGGCaGCU---UGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 93549 0.68 0.933065
Target:  5'- gCCgcccaGUAGCgGUCGAcggcgguGCGGCggGAcGCg -3'
miRNA:   3'- -GGag---CAUCGgCAGCU-------UGCCGuaCU-CG- -5'
23735 5' -53.5 NC_005261.1 + 85574 0.68 0.933572
Target:  5'- gUUCGgcGCCG-CGAccGCGGCcuccgcGAGCg -3'
miRNA:   3'- gGAGCauCGGCaGCU--UGCCGua----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 14157 0.68 0.933572
Target:  5'- gCUCc-AGCCG-CGAACGGCGcgcgucucgGGGCg -3'
miRNA:   3'- gGAGcaUCGGCaGCUUGCCGUa--------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 115969 0.68 0.926795
Target:  5'- aCCUCGUccuccgagguguAGUCGUCGcuGacgagccgcccgagGCGGCcUGAGCc -3'
miRNA:   3'- -GGAGCA------------UCGGCAGC--U--------------UGCCGuACUCG- -5'
23735 5' -53.5 NC_005261.1 + 59222 0.68 0.905264
Target:  5'- gUCUCGUAguGCCGcCGGgccACGaGCGaGAGCg -3'
miRNA:   3'- -GGAGCAU--CGGCaGCU---UGC-CGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 103849 0.69 0.89888
Target:  5'- cCCUUGcgcgcgAGCCG-CGGcgGCGGCG-GGGCg -3'
miRNA:   3'- -GGAGCa-----UCGGCaGCU--UGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 118148 0.69 0.892261
Target:  5'- gCUCGcgcagacgcUGGCCGUC--GCGGCG-GGGCu -3'
miRNA:   3'- gGAGC---------AUCGGCAGcuUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 127363 0.69 0.892261
Target:  5'- cCCgCGUGGCUaggauGUCGuugGCGGCGgcgagGAGCc -3'
miRNA:   3'- -GGaGCAUCGG-----CAGCu--UGCCGUa----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 128865 0.69 0.892261
Target:  5'- gCCUCGUcgcuGCCGaCGAcgaGGCggGGGCc -3'
miRNA:   3'- -GGAGCAu---CGGCaGCUug-CCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 17855 0.69 0.892261
Target:  5'- gCCUCGUaagAGCgGcCGGcCGGCAggccaagGGGCa -3'
miRNA:   3'- -GGAGCA---UCGgCaGCUuGCCGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 33061 0.69 0.89888
Target:  5'- aCUCGgcGCCGggGAcGCGGCGcuGGCg -3'
miRNA:   3'- gGAGCauCGGCagCU-UGCCGUacUCG- -5'
23735 5' -53.5 NC_005261.1 + 115386 0.69 0.89888
Target:  5'- gCgUCGUggucuucagcgGGUCGUCGAccgcggGCGGCAgccgGGGCc -3'
miRNA:   3'- -GgAGCA-----------UCGGCAGCU------UGCCGUa---CUCG- -5'
23735 5' -53.5 NC_005261.1 + 13110 0.69 0.89888
Target:  5'- gCUCGgGGgCGUCG-GCGGCcgcgGGGCg -3'
miRNA:   3'- gGAGCaUCgGCAGCuUGCCGua--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 98046 0.69 0.89888
Target:  5'- aCUgGcGGCCG-CGGGCGGCGggaccgcGGGCg -3'
miRNA:   3'- gGAgCaUCGGCaGCUUGCCGUa------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.