Results 61 - 80 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 33061 | 0.69 | 0.89888 |
Target: 5'- aCUCGgcGCCGggGAcGCGGCGcuGGCg -3' miRNA: 3'- gGAGCauCGGCagCU-UGCCGUacUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 11022 | 0.69 | 0.892261 |
Target: 5'- gCCUCGUcgccgGGcCCGUCccccGGCGGCAcucGGGCg -3' miRNA: 3'- -GGAGCA-----UC-GGCAGc---UUGCCGUa--CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 127729 | 0.69 | 0.89888 |
Target: 5'- gCCUgGUAGCgGgagcuuGGCGGCggGAGCg -3' miRNA: 3'- -GGAgCAUCGgCagc---UUGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 13110 | 0.69 | 0.89888 |
Target: 5'- gCUCGgGGgCGUCG-GCGGCcgcgGGGCg -3' miRNA: 3'- gGAGCaUCgGCAGCuUGCCGua--CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 98046 | 0.69 | 0.89888 |
Target: 5'- aCUgGcGGCCG-CGGGCGGCGggaccgcGGGCg -3' miRNA: 3'- gGAgCaUCGGCaGCUUGCCGUa------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 103849 | 0.69 | 0.89888 |
Target: 5'- cCCUUGcgcgcgAGCCG-CGGcgGCGGCG-GGGCg -3' miRNA: 3'- -GGAGCa-----UCGGCaGCU--UGCCGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 21728 | 0.69 | 0.869541 |
Target: 5'- gCUUCG-AGCCGaUCGAcacGCGGCugcugcgccugGAGCg -3' miRNA: 3'- -GGAGCaUCGGC-AGCU---UGCCGua---------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 136981 | 0.7 | 0.847836 |
Target: 5'- gCCUCGUccccgccuGGCagGUCGAucguGCGGCcgGAGa -3' miRNA: 3'- -GGAGCA--------UCGg-CAGCU----UGCCGuaCUCg -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 15384 | 0.7 | 0.855774 |
Target: 5'- cCCUCGgcgccGCCGUCGAugccgACGcGCAgaaaguaGAGCc -3' miRNA: 3'- -GGAGCau---CGGCAGCU-----UGC-CGUa------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 24921 | 0.7 | 0.863507 |
Target: 5'- cCCUCGgcggcugcAGCCGcCGAGgGGCAggcuGGCa -3' miRNA: 3'- -GGAGCa-------UCGGCaGCUUgCCGUac--UCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 16234 | 0.7 | 0.855774 |
Target: 5'- cCCUCGgGGCgGUCGAcgucCGcGCcgGGGCc -3' miRNA: 3'- -GGAGCaUCGgCAGCUu---GC-CGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 87391 | 0.7 | 0.863507 |
Target: 5'- uCCUCG--GCCGUCGucucGACGGCGccgucgacGGGCg -3' miRNA: 3'- -GGAGCauCGGCAGC----UUGCCGUa-------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 84951 | 0.71 | 0.822855 |
Target: 5'- uCCUCGgcGGCCGcCGA--GGCGUcGGGCg -3' miRNA: 3'- -GGAGCa-UCGGCaGCUugCCGUA-CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 14096 | 0.71 | 0.796288 |
Target: 5'- aCUCGcGGUCGUCGA--GGCAgacGGGCg -3' miRNA: 3'- gGAGCaUCGGCAGCUugCCGUa--CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 17059 | 0.71 | 0.796288 |
Target: 5'- gCUCGcGGCCGUCcuggaagggcGACGGgAUGGGCc -3' miRNA: 3'- gGAGCaUCGGCAGc---------UUGCCgUACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 41365 | 0.71 | 0.796288 |
Target: 5'- gCCUCGUGGugaCCGUCaccUGGCuguUGAGCa -3' miRNA: 3'- -GGAGCAUC---GGCAGcuuGCCGu--ACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 33596 | 0.71 | 0.805306 |
Target: 5'- aCCaggggCGgcGCCGgcgCGGGCGGCG-GGGCc -3' miRNA: 3'- -GGa----GCauCGGCa--GCUUGCCGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 50983 | 0.71 | 0.805306 |
Target: 5'- aCCUCucGGCCGaCG-GCGGCgcGUGGGCg -3' miRNA: 3'- -GGAGcaUCGGCaGCuUGCCG--UACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 94855 | 0.71 | 0.805306 |
Target: 5'- gCCUCGgcGCuCG-CGcACGGCccGGGCg -3' miRNA: 3'- -GGAGCauCG-GCaGCuUGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 32477 | 0.71 | 0.822855 |
Target: 5'- aCUCGggcuucccggGGCCGgCGAcgGCGGCAUcGGCg -3' miRNA: 3'- gGAGCa---------UCGGCaGCU--UGCCGUAcUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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