Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 103849 | 0.69 | 0.89888 |
Target: 5'- cCCUUGcgcgcgAGCCG-CGGcgGCGGCG-GGGCg -3' miRNA: 3'- -GGAGCa-----UCGGCaGCU--UGCCGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 128865 | 0.69 | 0.892261 |
Target: 5'- gCCUCGUcgcuGCCGaCGAcgaGGCggGGGCc -3' miRNA: 3'- -GGAGCAu---CGGCaGCUug-CCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 127363 | 0.69 | 0.892261 |
Target: 5'- cCCgCGUGGCUaggauGUCGuugGCGGCGgcgagGAGCc -3' miRNA: 3'- -GGaGCAUCGG-----CAGCu--UGCCGUa----CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 21728 | 0.69 | 0.869541 |
Target: 5'- gCUUCG-AGCCGaUCGAcacGCGGCugcugcgccugGAGCg -3' miRNA: 3'- -GGAGCaUCGGC-AGCU---UGCCGua---------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 60039 | 0.69 | 0.871028 |
Target: 5'- gCCgUCGgcGCCGaCGGcgGCGGCGaaGAGCg -3' miRNA: 3'- -GG-AGCauCGGCaGCU--UGCCGUa-CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 98180 | 0.69 | 0.871028 |
Target: 5'- uCCUUGgAGCCGcCGGgggcGCGGCGggcagcGGGCg -3' miRNA: 3'- -GGAGCaUCGGCaGCU----UGCCGUa-----CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 58967 | 0.69 | 0.87833 |
Target: 5'- gCCUCGgcGCCcgcGUCGAaggccuccacggGCGGCGgugcgccGGGCu -3' miRNA: 3'- -GGAGCauCGG---CAGCU------------UGCCGUa------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 12702 | 0.69 | 0.88541 |
Target: 5'- aCCUUGaAGCC--CGAGCGGCucGGGCg -3' miRNA: 3'- -GGAGCaUCGGcaGCUUGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 11022 | 0.69 | 0.892261 |
Target: 5'- gCCUCGUcgccgGGcCCGUCccccGGCGGCAcucGGGCg -3' miRNA: 3'- -GGAGCA-----UC-GGCAGc---UUGCCGUa--CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 118148 | 0.69 | 0.892261 |
Target: 5'- gCUCGcgcagacgcUGGCCGUC--GCGGCG-GGGCu -3' miRNA: 3'- gGAGC---------AUCGGCAGcuUGCCGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 24381 | 0.68 | 0.922976 |
Target: 5'- uCC-CGgugGGCuCGUCG-GCGGCG-GGGCg -3' miRNA: 3'- -GGaGCa--UCG-GCAGCuUGCCGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 121781 | 0.68 | 0.922976 |
Target: 5'- ---gGUGGCCG-CGGcCGGCGggcUGGGCa -3' miRNA: 3'- ggagCAUCGGCaGCUuGCCGU---ACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 72822 | 0.68 | 0.922976 |
Target: 5'- aCCUCGagGGCCGcaaggCGGuCGGCcaGGGCg -3' miRNA: 3'- -GGAGCa-UCGGCa----GCUuGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 103502 | 0.68 | 0.917314 |
Target: 5'- uCgUCGgcGCCG-CGGACGGC---GGCg -3' miRNA: 3'- -GgAGCauCGGCaGCUUGCCGuacUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 15141 | 0.68 | 0.917314 |
Target: 5'- cCUUCGcccccGCCGUccgCGGugGGgGUGGGCg -3' miRNA: 3'- -GGAGCau---CGGCA---GCUugCCgUACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 106285 | 0.68 | 0.917314 |
Target: 5'- gCC-CGUGcaaacGCCGUCGAccuCGGC--GAGCa -3' miRNA: 3'- -GGaGCAU-----CGGCAGCUu--GCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 104988 | 0.68 | 0.917314 |
Target: 5'- gCCcCGgcGCCcagcgCGGGCGGCGgucgGGGCg -3' miRNA: 3'- -GGaGCauCGGca---GCUUGCCGUa---CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 17154 | 0.68 | 0.911409 |
Target: 5'- --aCGUAGaCCGUCacccGCGGCGcGGGCg -3' miRNA: 3'- ggaGCAUC-GGCAGcu--UGCCGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 80040 | 0.68 | 0.905264 |
Target: 5'- gCCgUCGccGCCGUCGccacuGGCGGCGggcgcgggGGGCg -3' miRNA: 3'- -GG-AGCauCGGCAGC-----UUGCCGUa-------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 66767 | 0.68 | 0.922976 |
Target: 5'- aCCgggUGUGGcCCGUCGcGCGcgauCAUGGGCu -3' miRNA: 3'- -GGa--GCAUC-GGCAGCuUGCc---GUACUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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