miRNA display CGI


Results 41 - 60 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 60039 0.69 0.871028
Target:  5'- gCCgUCGgcGCCGaCGGcgGCGGCGaaGAGCg -3'
miRNA:   3'- -GG-AGCauCGGCaGCU--UGCCGUa-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 61179 0.81 0.288192
Target:  5'- uCUUCGUGGCCGUCGAG-GGCAacAGCa -3'
miRNA:   3'- -GGAGCAUCGGCAGCUUgCCGUacUCG- -5'
23735 5' -53.5 NC_005261.1 + 64508 0.65 0.974563
Target:  5'- gCUCGgGGcCCG-CGGGCGGCuccucgucgggGGGCa -3'
miRNA:   3'- gGAGCaUC-GGCaGCUUGCCGua---------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 64670 0.76 0.535622
Target:  5'- aCUCGUcGCCGUgGuGCGGCAccGGGCg -3'
miRNA:   3'- gGAGCAuCGGCAgCuUGCCGUa-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 66767 0.68 0.922976
Target:  5'- aCCgggUGUGGcCCGUCGcGCGcgauCAUGGGCu -3'
miRNA:   3'- -GGa--GCAUC-GGCAGCuUGCc---GUACUCG- -5'
23735 5' -53.5 NC_005261.1 + 67802 0.67 0.947649
Target:  5'- gCCUCGgcGCCGcccaguggcaacUCGGGCGcGCGcagGAGg -3'
miRNA:   3'- -GGAGCauCGGC------------AGCUUGC-CGUa--CUCg -5'
23735 5' -53.5 NC_005261.1 + 69501 0.67 0.955846
Target:  5'- aCCU-GUAcGCCGgcggCGGGCuGCcgGAGCu -3'
miRNA:   3'- -GGAgCAU-CGGCa---GCUUGcCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 71057 0.66 0.972403
Target:  5'- --cCGUgggccAGCCGcCGcGCGGCGggcgGGGCg -3'
miRNA:   3'- ggaGCA-----UCGGCaGCuUGCCGUa---CUCG- -5'
23735 5' -53.5 NC_005261.1 + 71330 0.74 0.668699
Target:  5'- --aCGUAGCCGgccgCGAGCGcGUccucgGUGAGCg -3'
miRNA:   3'- ggaGCAUCGGCa---GCUUGC-CG-----UACUCG- -5'
23735 5' -53.5 NC_005261.1 + 72822 0.68 0.922976
Target:  5'- aCCUCGagGGCCGcaaggCGGuCGGCcaGGGCg -3'
miRNA:   3'- -GGAGCa-UCGGCa----GCUuGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 76543 0.67 0.938505
Target:  5'- aCCUC---GCCcUCu-ACGGCAUGGGCg -3'
miRNA:   3'- -GGAGcauCGGcAGcuUGCCGUACUCG- -5'
23735 5' -53.5 NC_005261.1 + 78269 0.66 0.96546
Target:  5'- uCUUCGUGGCCca-GAugauGCGGCAUcgcuaggaaaaggcGAGCc -3'
miRNA:   3'- -GGAGCAUCGGcagCU----UGCCGUA--------------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 80040 0.68 0.905264
Target:  5'- gCCgUCGccGCCGUCGccacuGGCGGCGggcgcgggGGGCg -3'
miRNA:   3'- -GG-AGCauCGGCAGC-----UUGCCGUa-------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 81332 0.72 0.749116
Target:  5'- gCCgUCGUcggGGCCGUCGGcGgGGCggGGGCu -3'
miRNA:   3'- -GG-AGCA---UCGGCAGCU-UgCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 82061 0.66 0.972403
Target:  5'- gCCaCGUcGCCGggUCG-ACGGCGUGccgcAGCa -3'
miRNA:   3'- -GGaGCAuCGGC--AGCuUGCCGUAC----UCG- -5'
23735 5' -53.5 NC_005261.1 + 82594 0.71 0.787119
Target:  5'- uCCUCGUugcGCUGgucCGGGCG-CGUGAGCc -3'
miRNA:   3'- -GGAGCAu--CGGCa--GCUUGCcGUACUCG- -5'
23735 5' -53.5 NC_005261.1 + 84951 0.71 0.822855
Target:  5'- uCCUCGgcGGCCGcCGA--GGCGUcGGGCg -3'
miRNA:   3'- -GGAGCa-UCGGCaGCUugCCGUA-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 85574 0.68 0.933572
Target:  5'- gUUCGgcGCCG-CGAccGCGGCcuccgcGAGCg -3'
miRNA:   3'- gGAGCauCGGCaGCU--UGCCGua----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 85910 0.66 0.958496
Target:  5'- gCCUCgGUGGCCugcUCGAccgugcucuggaugGCGGCcaGGGCg -3'
miRNA:   3'- -GGAG-CAUCGGc--AGCU--------------UGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 86995 0.74 0.668699
Target:  5'- cCCUCGUGGCCcucGUCGAA-GGCcaaGUGcGCg -3'
miRNA:   3'- -GGAGCAUCGG---CAGCUUgCCG---UACuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.