Results 61 - 80 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 87088 | 0.67 | 0.951865 |
Target: 5'- --aCGUAGCCGUgcaGcAGCGcGCA-GAGCg -3' miRNA: 3'- ggaGCAUCGGCAg--C-UUGC-CGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 87391 | 0.7 | 0.863507 |
Target: 5'- uCCUCG--GCCGUCGucucGACGGCGccgucgacGGGCg -3' miRNA: 3'- -GGAGCauCGGCAGC----UUGCCGUa-------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 90996 | 0.66 | 0.966429 |
Target: 5'- aCCUCGgccUCGUCGccGGCGGCAaGAuGCu -3' miRNA: 3'- -GGAGCaucGGCAGC--UUGCCGUaCU-CG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 93549 | 0.68 | 0.933065 |
Target: 5'- gCCgcccaGUAGCgGUCGAcggcgguGCGGCggGAcGCg -3' miRNA: 3'- -GGag---CAUCGgCAGCU-------UGCCGuaCU-CG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 93717 | 0.76 | 0.555736 |
Target: 5'- uCCUCGUcGUCGUCG-GCGGCGgcAGCg -3' miRNA: 3'- -GGAGCAuCGGCAGCuUGCCGUacUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 93826 | 0.71 | 0.805306 |
Target: 5'- aCCgcCGcAGCCGcCGGGCGGCGccgccGAGCa -3' miRNA: 3'- -GGa-GCaUCGGCaGCUUGCCGUa----CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 94855 | 0.71 | 0.805306 |
Target: 5'- gCCUCGgcGCuCG-CGcACGGCccGGGCg -3' miRNA: 3'- -GGAGCauCG-GCaGCuUGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 96118 | 0.66 | 0.963124 |
Target: 5'- aCgUCGcUGGCCaugGUCGAccuGCGGCGgcGGCa -3' miRNA: 3'- -GgAGC-AUCGG---CAGCU---UGCCGUacUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 98046 | 0.69 | 0.89888 |
Target: 5'- aCUgGcGGCCG-CGGGCGGCGggaccgcGGGCg -3' miRNA: 3'- gGAgCaUCGGCaGCUUGCCGUa------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 98139 | 0.66 | 0.972403 |
Target: 5'- aCCg-GcGGCCGUCG-GCGGCAaggccgcGGGCg -3' miRNA: 3'- -GGagCaUCGGCAGCuUGCCGUa------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 98180 | 0.69 | 0.871028 |
Target: 5'- uCCUUGgAGCCGcCGGgggcGCGGCGggcagcGGGCg -3' miRNA: 3'- -GGAGCaUCGGCaGCU----UGCCGUa-----CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 98949 | 0.73 | 0.709442 |
Target: 5'- uCCUCGUAGUCGagCGucaggcuCGGCAggucccgGAGCa -3' miRNA: 3'- -GGAGCAUCGGCa-GCuu-----GCCGUa------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 101674 | 0.68 | 0.928396 |
Target: 5'- gCCUCGUaggccgAGCCGgCGAAgcgGGCGUGgucgaAGCg -3' miRNA: 3'- -GGAGCA------UCGGCaGCUUg--CCGUAC-----UCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 102305 | 0.66 | 0.972403 |
Target: 5'- -gUCGUAGCCGcgcgccgCGGccGCGGCGcGcAGCc -3' miRNA: 3'- ggAGCAUCGGCa------GCU--UGCCGUaC-UCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 102786 | 0.66 | 0.966429 |
Target: 5'- gCCUCGccccGGCCG-CGAgcGCGGCGcccAGCc -3' miRNA: 3'- -GGAGCa---UCGGCaGCU--UGCCGUac-UCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 103502 | 0.68 | 0.917314 |
Target: 5'- uCgUCGgcGCCG-CGGACGGC---GGCg -3' miRNA: 3'- -GgAGCauCGGCaGCUUGCCGuacUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 103598 | 0.67 | 0.955846 |
Target: 5'- gCCgcCGUGGCCG-CG-GCGGCAgcgcggGAGg -3' miRNA: 3'- -GGa-GCAUCGGCaGCuUGCCGUa-----CUCg -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 103849 | 0.69 | 0.89888 |
Target: 5'- cCCUUGcgcgcgAGCCG-CGGcgGCGGCG-GGGCg -3' miRNA: 3'- -GGAGCa-----UCGGCaGCU--UGCCGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 104988 | 0.68 | 0.917314 |
Target: 5'- gCCcCGgcGCCcagcgCGGGCGGCGgucgGGGCg -3' miRNA: 3'- -GGaGCauCGGca---GCUUGCCGUa---CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 105153 | 0.66 | 0.972403 |
Target: 5'- uCCUCGcGGCUcgaGGGCGGCGUccacgGGGCc -3' miRNA: 3'- -GGAGCaUCGGcagCUUGCCGUA-----CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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