Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 87088 | 0.67 | 0.951865 |
Target: 5'- --aCGUAGCCGUgcaGcAGCGcGCA-GAGCg -3' miRNA: 3'- ggaGCAUCGGCAg--C-UUGC-CGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 86995 | 0.74 | 0.668699 |
Target: 5'- cCCUCGUGGCCcucGUCGAA-GGCcaaGUGcGCg -3' miRNA: 3'- -GGAGCAUCGG---CAGCUUgCCG---UACuCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 85910 | 0.66 | 0.958496 |
Target: 5'- gCCUCgGUGGCCugcUCGAccgugcucuggaugGCGGCcaGGGCg -3' miRNA: 3'- -GGAG-CAUCGGc--AGCU--------------UGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 85574 | 0.68 | 0.933572 |
Target: 5'- gUUCGgcGCCG-CGAccGCGGCcuccgcGAGCg -3' miRNA: 3'- gGAGCauCGGCaGCU--UGCCGua----CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 84951 | 0.71 | 0.822855 |
Target: 5'- uCCUCGgcGGCCGcCGA--GGCGUcGGGCg -3' miRNA: 3'- -GGAGCa-UCGGCaGCUugCCGUA-CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 82594 | 0.71 | 0.787119 |
Target: 5'- uCCUCGUugcGCUGgucCGGGCG-CGUGAGCc -3' miRNA: 3'- -GGAGCAu--CGGCa--GCUUGCcGUACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 82061 | 0.66 | 0.972403 |
Target: 5'- gCCaCGUcGCCGggUCG-ACGGCGUGccgcAGCa -3' miRNA: 3'- -GGaGCAuCGGC--AGCuUGCCGUAC----UCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 81332 | 0.72 | 0.749116 |
Target: 5'- gCCgUCGUcggGGCCGUCGGcGgGGCggGGGCu -3' miRNA: 3'- -GG-AGCA---UCGGCAGCU-UgCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 80040 | 0.68 | 0.905264 |
Target: 5'- gCCgUCGccGCCGUCGccacuGGCGGCGggcgcgggGGGCg -3' miRNA: 3'- -GG-AGCauCGGCAGC-----UUGCCGUa-------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 78269 | 0.66 | 0.96546 |
Target: 5'- uCUUCGUGGCCca-GAugauGCGGCAUcgcuaggaaaaggcGAGCc -3' miRNA: 3'- -GGAGCAUCGGcagCU----UGCCGUA--------------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 76543 | 0.67 | 0.938505 |
Target: 5'- aCCUC---GCCcUCu-ACGGCAUGGGCg -3' miRNA: 3'- -GGAGcauCGGcAGcuUGCCGUACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 72822 | 0.68 | 0.922976 |
Target: 5'- aCCUCGagGGCCGcaaggCGGuCGGCcaGGGCg -3' miRNA: 3'- -GGAGCa-UCGGCa----GCUuGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 71330 | 0.74 | 0.668699 |
Target: 5'- --aCGUAGCCGgccgCGAGCGcGUccucgGUGAGCg -3' miRNA: 3'- ggaGCAUCGGCa---GCUUGC-CG-----UACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 71057 | 0.66 | 0.972403 |
Target: 5'- --cCGUgggccAGCCGcCGcGCGGCGggcgGGGCg -3' miRNA: 3'- ggaGCA-----UCGGCaGCuUGCCGUa---CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 69501 | 0.67 | 0.955846 |
Target: 5'- aCCU-GUAcGCCGgcggCGGGCuGCcgGAGCu -3' miRNA: 3'- -GGAgCAU-CGGCa---GCUUGcCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 67802 | 0.67 | 0.947649 |
Target: 5'- gCCUCGgcGCCGcccaguggcaacUCGGGCGcGCGcagGAGg -3' miRNA: 3'- -GGAGCauCGGC------------AGCUUGC-CGUa--CUCg -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 66767 | 0.68 | 0.922976 |
Target: 5'- aCCgggUGUGGcCCGUCGcGCGcgauCAUGGGCu -3' miRNA: 3'- -GGa--GCAUC-GGCAGCuUGCc---GUACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 64670 | 0.76 | 0.535622 |
Target: 5'- aCUCGUcGCCGUgGuGCGGCAccGGGCg -3' miRNA: 3'- gGAGCAuCGGCAgCuUGCCGUa-CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 64508 | 0.65 | 0.974563 |
Target: 5'- gCUCGgGGcCCG-CGGGCGGCuccucgucgggGGGCa -3' miRNA: 3'- gGAGCaUC-GGCaGCUUGCCGua---------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 61179 | 0.81 | 0.288192 |
Target: 5'- uCUUCGUGGCCGUCGAG-GGCAacAGCa -3' miRNA: 3'- -GGAGCAUCGGCAGCUUgCCGUacUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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