miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 3' -56.8 NC_005261.1 + 36828 0.66 0.854275
Target:  5'- cGGUAUG-CgGUGCCGGcGC-CCGGGGg -3'
miRNA:   3'- cUCGUACaGgUACGGCU-CGaGGUCCU- -5'
23736 3' -56.8 NC_005261.1 + 108164 0.66 0.852688
Target:  5'- cAGCGcGUCCGccagggcgcgcgGCCGcGGCUCCGGGc -3'
miRNA:   3'- cUCGUaCAGGUa-----------CGGC-UCGAGGUCCu -5'
23736 3' -56.8 NC_005261.1 + 47105 0.66 0.846258
Target:  5'- aGAGCccGUCCGUGaggaCGuGCgcgUCCAGGu -3'
miRNA:   3'- -CUCGuaCAGGUACg---GCuCG---AGGUCCu -5'
23736 3' -56.8 NC_005261.1 + 58012 0.66 0.845445
Target:  5'- aGGaCGUGgaaGUGCCGcggcggcAGCUCCAGGGa -3'
miRNA:   3'- cUC-GUACaggUACGGC-------UCGAGGUCCU- -5'
23736 3' -56.8 NC_005261.1 + 121448 0.66 0.829631
Target:  5'- cGGGCAUGgggCCGucgaUGgCGAGCUCCucGGc -3'
miRNA:   3'- -CUCGUACa--GGU----ACgGCUCGAGGu-CCu -5'
23736 3' -56.8 NC_005261.1 + 99541 0.67 0.803327
Target:  5'- aGGGCGcGUCCAgGCgGcGCgCCAGGAa -3'
miRNA:   3'- -CUCGUaCAGGUaCGgCuCGaGGUCCU- -5'
23736 3' -56.8 NC_005261.1 + 121962 0.67 0.79423
Target:  5'- cAGCucg-CCGUGCCGcGCUCCAGc- -3'
miRNA:   3'- cUCGuacaGGUACGGCuCGAGGUCcu -5'
23736 3' -56.8 NC_005261.1 + 15645 0.67 0.756428
Target:  5'- uAGCGccgCCcgGCCGGgagcugguGCUCCAGGAa -3'
miRNA:   3'- cUCGUacaGGuaCGGCU--------CGAGGUCCU- -5'
23736 3' -56.8 NC_005261.1 + 40688 0.67 0.755457
Target:  5'- gGAGCcgGcgCCG-GCCGGGCUCCuccgaaagcagcgAGGGg -3'
miRNA:   3'- -CUCGuaCa-GGUaCGGCUCGAGG-------------UCCU- -5'
23736 3' -56.8 NC_005261.1 + 24526 0.68 0.723856
Target:  5'- uGAGCAaggUGUCCccgcccacguaccugGCCGGGCggcgCCAGGu -3'
miRNA:   3'- -CUCGU---ACAGGua-------------CGGCUCGa---GGUCCu -5'
23736 3' -56.8 NC_005261.1 + 45188 0.73 0.454499
Target:  5'- cGAGUGUGaggCCAUGCCG-GCcuUCCGGGGc -3'
miRNA:   3'- -CUCGUACa--GGUACGGCuCG--AGGUCCU- -5'
23736 3' -56.8 NC_005261.1 + 95347 0.75 0.342979
Target:  5'- cGGGCGUGUCCGUGCUc--UUCCAGGGg -3'
miRNA:   3'- -CUCGUACAGGUACGGcucGAGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.