miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 121765 0.66 0.729621
Target:  5'- aGCCCgagcgcggUGGGguGGCCGcgG-CCGGCGGGc -3'
miRNA:   3'- cCGGG--------ACCU--UCGGCuaCgGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 92763 0.66 0.729621
Target:  5'- cGCCgCUcGGAccgGGCCGA-GCCCGGgcuCGGGg -3'
miRNA:   3'- cCGG-GA-CCU---UCGGCUaCGGGUC---GCUC- -5'
23736 5' -60.1 NC_005261.1 + 2168 0.66 0.729621
Target:  5'- cGGCCCaGGcgugcGAGUCGgcGCUCAGCa-- -3'
miRNA:   3'- -CCGGGaCC-----UUCGGCuaCGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 86215 0.66 0.719925
Target:  5'- cGCgCCgaaccgGGGcAGCCGGUGCCgCAGcCGAu -3'
miRNA:   3'- cCG-GGa-----CCU-UCGGCUACGG-GUC-GCUc -5'
23736 5' -60.1 NC_005261.1 + 43823 0.66 0.719925
Target:  5'- cGCCCUccGuGGAGaaGcUGCUCGGCGAGg -3'
miRNA:   3'- cCGGGA--C-CUUCggCuACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 6240 0.66 0.719925
Target:  5'- cGCCCgGGGagGGCC--UGCCCGccccGCGGGg -3'
miRNA:   3'- cCGGGaCCU--UCGGcuACGGGU----CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 75822 0.66 0.719925
Target:  5'- uGCCC-GGcgcGGCCGc-GCCCGGgGAGg -3'
miRNA:   3'- cCGGGaCCu--UCGGCuaCGGGUCgCUC- -5'
23736 5' -60.1 NC_005261.1 + 98303 0.66 0.719925
Target:  5'- cGGCCUcGGggGCgGgcGCcgccgCCAGCGGc -3'
miRNA:   3'- -CCGGGaCCuuCGgCuaCG-----GGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 23165 0.66 0.719925
Target:  5'- gGGCCCggcaGGcgcGCCGGggGCgaCAGCGAGc -3'
miRNA:   3'- -CCGGGa---CCuu-CGGCUa-CGg-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 23008 0.66 0.719925
Target:  5'- gGGCCC-GGAGGCg---GCCC-GCGAa -3'
miRNA:   3'- -CCGGGaCCUUCGgcuaCGGGuCGCUc -5'
23736 5' -60.1 NC_005261.1 + 13782 0.66 0.719925
Target:  5'- cGCCCUc---GCCc-UGCCCGGCGGGg -3'
miRNA:   3'- cCGGGAccuuCGGcuACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 345 0.66 0.710158
Target:  5'- cGGCCCgc--AGCCcggcGcgGCCCGGCGGc -3'
miRNA:   3'- -CCGGGaccuUCGG----CuaCGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 138016 0.66 0.710158
Target:  5'- cGGCCCgc--AGCCcggcGcgGCCCGGCGGc -3'
miRNA:   3'- -CCGGGaccuUCGG----CuaCGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 15780 0.66 0.710158
Target:  5'- aGGCCgCUGGcGGgCGccGCCCGcGCGGc -3'
miRNA:   3'- -CCGG-GACCuUCgGCuaCGGGU-CGCUc -5'
23736 5' -60.1 NC_005261.1 + 50999 0.66 0.700327
Target:  5'- cGGCgCgUGGGcgcGGCgGGaGCUCGGCGAGc -3'
miRNA:   3'- -CCG-GgACCU---UCGgCUaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 106576 0.66 0.690441
Target:  5'- cGGCCCcGG-GGCCGccGCgCGGCGc- -3'
miRNA:   3'- -CCGGGaCCuUCGGCuaCGgGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 32361 0.66 0.690441
Target:  5'- gGGCCCgcgGGAGacGCUGGUGCaggcgCGGCGcGg -3'
miRNA:   3'- -CCGGGa--CCUU--CGGCUACGg----GUCGCuC- -5'
23736 5' -60.1 NC_005261.1 + 60170 0.66 0.690441
Target:  5'- uGCCgUGGAAGCgCGucugcGCCgCGGCGGa -3'
miRNA:   3'- cCGGgACCUUCG-GCua---CGG-GUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 5132 0.66 0.690441
Target:  5'- cGGCCCgccGGcgcucgcgcGCCucgGCCCGGCGGGc -3'
miRNA:   3'- -CCGGGa--CCuu-------CGGcuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 28522 0.66 0.680508
Target:  5'- cGGCCCggagGGggGCCcgGAggagGaCCCGGCc-- -3'
miRNA:   3'- -CCGGGa---CCuuCGG--CUa---C-GGGUCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.