miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 2168 0.66 0.729621
Target:  5'- cGGCCCaGGcgugcGAGUCGgcGCUCAGCa-- -3'
miRNA:   3'- -CCGGGaCC-----UUCGGCuaCGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 23165 0.66 0.719925
Target:  5'- gGGCCCggcaGGcgcGCCGGggGCgaCAGCGAGc -3'
miRNA:   3'- -CCGGGa---CCuu-CGGCUa-CGg-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 15780 0.66 0.710158
Target:  5'- aGGCCgCUGGcGGgCGccGCCCGcGCGGc -3'
miRNA:   3'- -CCGG-GACCuUCgGCuaCGGGU-CGCUc -5'
23736 5' -60.1 NC_005261.1 + 43823 0.66 0.719925
Target:  5'- cGCCCUccGuGGAGaaGcUGCUCGGCGAGg -3'
miRNA:   3'- cCGGGA--C-CUUCggCuACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 34927 0.67 0.650511
Target:  5'- cGGCCaCgcgGGGggcGGCCGGcgcgacccggGCCCGGCGGc -3'
miRNA:   3'- -CCGG-Ga--CCU---UCGGCUa---------CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 92383 0.67 0.670536
Target:  5'- uGCCCaGGuaguAGCCcAUGCCCgagAGCGAc -3'
miRNA:   3'- cCGGGaCCu---UCGGcUACGGG---UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 43450 0.67 0.670536
Target:  5'- cGGCgCCUGGAcgucgccgGGCgGGUGCUgGcggaguGCGAGg -3'
miRNA:   3'- -CCG-GGACCU--------UCGgCUACGGgU------CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 101289 0.67 0.670536
Target:  5'- gGGCCCgcGGucGUCGAUGCgcgccgUUAGCGGGu -3'
miRNA:   3'- -CCGGGa-CCuuCGGCUACG------GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 58513 0.67 0.640473
Target:  5'- cGCCCgcguccaGGAGGCgGAUcgaGCCCAGCc-- -3'
miRNA:   3'- cCGGGa------CCUUCGgCUA---CGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 92230 0.67 0.634447
Target:  5'- cGGCCCcgccgagcgcgcggaUGGAGGCCaGGaagGCCCGGUa-- -3'
miRNA:   3'- -CCGGG---------------ACCUUCGG-CUa--CGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 24407 0.67 0.639469
Target:  5'- cGGUCCUGGggGCUcggauccucgguuGcgGUCCgcGGCGAu -3'
miRNA:   3'- -CCGGGACCuuCGG-------------CuaCGGG--UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 125789 0.67 0.660534
Target:  5'- aGGCCgCUGcGAacggggcuugGGCCGggGCCgCcGCGAGc -3'
miRNA:   3'- -CCGG-GAC-CU----------UCGGCuaCGG-GuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 107672 0.67 0.640473
Target:  5'- cGGCCCcgccGGgcGuuGccGCCgCGGCGGGg -3'
miRNA:   3'- -CCGGGa---CCuuCggCuaCGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 118503 0.67 0.63043
Target:  5'- cGGaCCCUGGc-GCC---GCUCGGCGAGg -3'
miRNA:   3'- -CC-GGGACCuuCGGcuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 77634 0.67 0.648504
Target:  5'- uGGCCCUGGccggcgccaucGCCGAcGgCCGGCGc- -3'
miRNA:   3'- -CCGGGACCuu---------CGGCUaCgGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 68101 0.67 0.650511
Target:  5'- aGGCCgugaaguucgggCUGGAgcugcgcgGGCCGcgGCgCGGCGAc -3'
miRNA:   3'- -CCGG------------GACCU--------UCGGCuaCGgGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 15940 0.67 0.649508
Target:  5'- gGGCCCgGGcagGAGCCGGgggcgagUGgCgGGCGGGg -3'
miRNA:   3'- -CCGGGaCC---UUCGGCU-------ACgGgUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 71604 0.67 0.63043
Target:  5'- aGGCCCgcc--GCCGcgGCCCGggcGCGGGc -3'
miRNA:   3'- -CCGGGaccuuCGGCuaCGGGU---CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 46466 0.67 0.650511
Target:  5'- aGGCCCUcGAAGCgcaggugcagcuCGgcGCCCuccGCGGGg -3'
miRNA:   3'- -CCGGGAcCUUCG------------GCuaCGGGu--CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 23848 0.67 0.640473
Target:  5'- gGGCUCgccgGGGcaGGCCGGcuggggcgggcuUGCCCcgGGCGGGc -3'
miRNA:   3'- -CCGGGa---CCU--UCGGCU------------ACGGG--UCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.