Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23736 | 5' | -60.1 | NC_005261.1 | + | 23512 | 0.84 | 0.062832 |
Target: 5'- gGGCCCUGGGAGCaCGcgGUCgGGCGAGc -3' miRNA: 3'- -CCGGGACCUUCG-GCuaCGGgUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 31472 | 0.77 | 0.171567 |
Target: 5'- cGGCCUgagUGGccGCCGGUGCgCGGCGGGc -3' miRNA: 3'- -CCGGG---ACCuuCGGCUACGgGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 72745 | 0.77 | 0.180272 |
Target: 5'- cGGCCCgcaUGGcGGGCCGcAUGCCCAGCa-- -3' miRNA: 3'- -CCGGG---ACC-UUCGGC-UACGGGUCGcuc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 74126 | 0.77 | 0.188903 |
Target: 5'- uGGUCCUGGc-GCCGGUGCugguguucgucucCCAGCGGGg -3' miRNA: 3'- -CCGGGACCuuCGGCUACG-------------GGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 16286 | 0.76 | 0.219102 |
Target: 5'- cGCCCggggGGgcGCCGucggGCCCAGCGGc -3' miRNA: 3'- cCGGGa---CCuuCGGCua--CGGGUCGCUc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 45639 | 0.76 | 0.22443 |
Target: 5'- gGGCCCgcgccGGAGCa-GUGCCCAGCGGGc -3' miRNA: 3'- -CCGGGac---CUUCGgcUACGGGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 63018 | 0.75 | 0.258736 |
Target: 5'- cGCCCgcgcGGgcGCCGgcGCCCgcGGCGAGg -3' miRNA: 3'- cCGGGa---CCuuCGGCuaCGGG--UCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 1240 | 0.75 | 0.246847 |
Target: 5'- cGGCCCcgGGAAGcCCGAguccgUGCCCGGgGGu -3' miRNA: 3'- -CCGGGa-CCUUC-GGCU-----ACGGGUCgCUc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 109861 | 0.75 | 0.241074 |
Target: 5'- cGGCuCCUGGggGCagCGggGCCCgcgGGCGGGc -3' miRNA: 3'- -CCG-GGACCuuCG--GCuaCGGG---UCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 91134 | 0.75 | 0.229867 |
Target: 5'- cGGCCgaGGccucAGCCGugccGCCCGGCGAGu -3' miRNA: 3'- -CCGGgaCCu---UCGGCua--CGGGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 9898 | 0.74 | 0.283911 |
Target: 5'- cGGCCCgcccgGGGcaagcccgccccAGCCGGccUGCCCcGGCGAGc -3' miRNA: 3'- -CCGGGa----CCU------------UCGGCU--ACGGG-UCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 9841 | 0.74 | 0.283911 |
Target: 5'- cGGCCCgcccgGGGcaagcccgccccAGCCGGccUGCCCcGGCGAGc -3' miRNA: 3'- -CCGGGa----CCU------------UCGGCU--ACGGG-UCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 98725 | 0.74 | 0.283911 |
Target: 5'- cGGCCUUGGggGCaCGcgGCCgC-GCGGGc -3' miRNA: 3'- -CCGGGACCuuCG-GCuaCGG-GuCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 4550 | 0.74 | 0.282607 |
Target: 5'- gGGCCCUGGccuuGGCUGGauccgcgggcggGUCCGGCGGGg -3' miRNA: 3'- -CCGGGACCu---UCGGCUa-----------CGGGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 31425 | 0.74 | 0.264854 |
Target: 5'- uGCCCggGGAGGCgcuggcggCGccGCCCGGCGAGg -3' miRNA: 3'- cCGGGa-CCUUCG--------GCuaCGGGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 109248 | 0.73 | 0.310983 |
Target: 5'- cGGCCCagUGcGggGCCacGAaGUCCAGCGAGc -3' miRNA: 3'- -CCGGG--AC-CuuCGG--CUaCGGGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 77049 | 0.73 | 0.318051 |
Target: 5'- cGGCCCUcGGcgaccgcgccuGGCCGGUGCCgC-GCGAGg -3' miRNA: 3'- -CCGGGA-CCu----------UCGGCUACGG-GuCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 88782 | 0.73 | 0.318051 |
Target: 5'- cGGCCCUGGccGCCGgcGCCgcgCAGCaGGa -3' miRNA: 3'- -CCGGGACCuuCGGCuaCGG---GUCGcUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 40486 | 0.73 | 0.325239 |
Target: 5'- aGGCCCUGGGAGCgGGcgauggucaUGgCCAGCuucGAGc -3' miRNA: 3'- -CCGGGACCUUCGgCU---------ACgGGUCG---CUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 132591 | 0.73 | 0.332546 |
Target: 5'- cGCCCgcGGAcGCCcg-GCCCGGCGAGc -3' miRNA: 3'- cCGGGa-CCUuCGGcuaCGGGUCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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