miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 23512 0.84 0.062832
Target:  5'- gGGCCCUGGGAGCaCGcgGUCgGGCGAGc -3'
miRNA:   3'- -CCGGGACCUUCG-GCuaCGGgUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 31472 0.77 0.171567
Target:  5'- cGGCCUgagUGGccGCCGGUGCgCGGCGGGc -3'
miRNA:   3'- -CCGGG---ACCuuCGGCUACGgGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 72745 0.77 0.180272
Target:  5'- cGGCCCgcaUGGcGGGCCGcAUGCCCAGCa-- -3'
miRNA:   3'- -CCGGG---ACC-UUCGGC-UACGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 74126 0.77 0.188903
Target:  5'- uGGUCCUGGc-GCCGGUGCugguguucgucucCCAGCGGGg -3'
miRNA:   3'- -CCGGGACCuuCGGCUACG-------------GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 16286 0.76 0.219102
Target:  5'- cGCCCggggGGgcGCCGucggGCCCAGCGGc -3'
miRNA:   3'- cCGGGa---CCuuCGGCua--CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 45639 0.76 0.22443
Target:  5'- gGGCCCgcgccGGAGCa-GUGCCCAGCGGGc -3'
miRNA:   3'- -CCGGGac---CUUCGgcUACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 91134 0.75 0.229867
Target:  5'- cGGCCgaGGccucAGCCGugccGCCCGGCGAGu -3'
miRNA:   3'- -CCGGgaCCu---UCGGCua--CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 109861 0.75 0.241074
Target:  5'- cGGCuCCUGGggGCagCGggGCCCgcgGGCGGGc -3'
miRNA:   3'- -CCG-GGACCuuCG--GCuaCGGG---UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 1240 0.75 0.246847
Target:  5'- cGGCCCcgGGAAGcCCGAguccgUGCCCGGgGGu -3'
miRNA:   3'- -CCGGGa-CCUUC-GGCU-----ACGGGUCgCUc -5'
23736 5' -60.1 NC_005261.1 + 63018 0.75 0.258736
Target:  5'- cGCCCgcgcGGgcGCCGgcGCCCgcGGCGAGg -3'
miRNA:   3'- cCGGGa---CCuuCGGCuaCGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 31425 0.74 0.264854
Target:  5'- uGCCCggGGAGGCgcuggcggCGccGCCCGGCGAGg -3'
miRNA:   3'- cCGGGa-CCUUCG--------GCuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 4550 0.74 0.282607
Target:  5'- gGGCCCUGGccuuGGCUGGauccgcgggcggGUCCGGCGGGg -3'
miRNA:   3'- -CCGGGACCu---UCGGCUa-----------CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 98725 0.74 0.283911
Target:  5'- cGGCCUUGGggGCaCGcgGCCgC-GCGGGc -3'
miRNA:   3'- -CCGGGACCuuCG-GCuaCGG-GuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 9841 0.74 0.283911
Target:  5'- cGGCCCgcccgGGGcaagcccgccccAGCCGGccUGCCCcGGCGAGc -3'
miRNA:   3'- -CCGGGa----CCU------------UCGGCU--ACGGG-UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 9898 0.74 0.283911
Target:  5'- cGGCCCgcccgGGGcaagcccgccccAGCCGGccUGCCCcGGCGAGc -3'
miRNA:   3'- -CCGGGa----CCU------------UCGGCU--ACGGG-UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 109248 0.73 0.310983
Target:  5'- cGGCCCagUGcGggGCCacGAaGUCCAGCGAGc -3'
miRNA:   3'- -CCGGG--AC-CuuCGG--CUaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 49214 0.73 0.310983
Target:  5'- gGGCg--GGAGGCCGgcGCCCAGCGc- -3'
miRNA:   3'- -CCGggaCCUUCGGCuaCGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 77049 0.73 0.318051
Target:  5'- cGGCCCUcGGcgaccgcgccuGGCCGGUGCCgC-GCGAGg -3'
miRNA:   3'- -CCGGGA-CCu----------UCGGCUACGG-GuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 88782 0.73 0.318051
Target:  5'- cGGCCCUGGccGCCGgcGCCgcgCAGCaGGa -3'
miRNA:   3'- -CCGGGACCuuCGGCuaCGG---GUCGcUC- -5'
23736 5' -60.1 NC_005261.1 + 40486 0.73 0.325239
Target:  5'- aGGCCCUGGGAGCgGGcgauggucaUGgCCAGCuucGAGc -3'
miRNA:   3'- -CCGGGACCUUCGgCU---------ACgGGUCG---CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.