miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 132591 0.73 0.332546
Target:  5'- cGCCCgcGGAcGCCcg-GCCCGGCGAGc -3'
miRNA:   3'- cCGGGa-CCUuCGGcuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 90098 0.72 0.370874
Target:  5'- gGGCCCguucgccGGcuGGGCCGAcgcgGCCCgcGGCGAGg -3'
miRNA:   3'- -CCGGGa------CC--UUCGGCUa---CGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 39392 0.72 0.378893
Target:  5'- cGGCCCUGGcGGCgaccCGAgcCCCAGCGGc -3'
miRNA:   3'- -CCGGGACCuUCG----GCUacGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 40240 0.72 0.382133
Target:  5'- uGGCCC-GGggGCCgugagcgccauggcgGcgGCCgCGGCGGGg -3'
miRNA:   3'- -CCGGGaCCuuCGG---------------CuaCGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 90388 0.72 0.387027
Target:  5'- aGGCCCcgccgGcGggGCUGgcGCCCGGCGcGGa -3'
miRNA:   3'- -CCGGGa----C-CuuCGGCuaCGGGUCGC-UC- -5'
23736 5' -60.1 NC_005261.1 + 30358 0.71 0.403637
Target:  5'- cGGCCCUGaAGGCCGGcgcGCCgGGCGc- -3'
miRNA:   3'- -CCGGGACcUUCGGCUa--CGGgUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 129821 0.71 0.412109
Target:  5'- cGCCCUGc--GCCcgGAUGCCCAGCGc- -3'
miRNA:   3'- cCGGGACcuuCGG--CUACGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 12731 0.71 0.429378
Target:  5'- gGGCCCgccGGcccccuGGgCGG-GCCCGGCGAGg -3'
miRNA:   3'- -CCGGGa--CCu-----UCgGCUaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 15651 0.71 0.429378
Target:  5'- cGCCCggccGGGAGCUGGUGCuCCAG-GAa -3'
miRNA:   3'- cCGGGa---CCUUCGGCUACG-GGUCgCUc -5'
23736 5' -60.1 NC_005261.1 + 117703 0.71 0.429378
Target:  5'- cGGCCCU-GAGGCCGGcgcgcggGCCCgcaAGCGGc -3'
miRNA:   3'- -CCGGGAcCUUCGGCUa------CGGG---UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 125682 0.7 0.465152
Target:  5'- cGCCgaaUGGGuuuGCCGGgcuugGCCCGGCGAc -3'
miRNA:   3'- cCGGg--ACCUu--CGGCUa----CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 119524 0.7 0.465152
Target:  5'- cGGCCCcGGuccccgcGGCCGAgcaagGCCCcgccGCGGGg -3'
miRNA:   3'- -CCGGGaCCu------UCGGCUa----CGGGu---CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 22662 0.7 0.466066
Target:  5'- cGGCgCCUGGGcggcgcccgagugccGCCGGgggacggGCCCGGCGAc -3'
miRNA:   3'- -CCG-GGACCUu--------------CGGCUa------CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 30478 0.7 0.474337
Target:  5'- gGGaCgaGGAGGCCGggGCcucggaaaCCAGCGAGg -3'
miRNA:   3'- -CCgGgaCCUUCGGCuaCG--------GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 38339 0.7 0.474337
Target:  5'- uGCUCUGG-GGCgCGcacGCCCAGCGGGc -3'
miRNA:   3'- cCGGGACCuUCG-GCua-CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 71055 0.7 0.483611
Target:  5'- cGCCgUGGGccAGCCGccGCgCGGCGGGc -3'
miRNA:   3'- cCGGgACCU--UCGGCuaCGgGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 22761 0.7 0.492032
Target:  5'- cGGCCCacgcgucUGGggGCgG--GCCCcGCGAGa -3'
miRNA:   3'- -CCGGG-------ACCuuCGgCuaCGGGuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 117369 0.7 0.492972
Target:  5'- aGGCcgcccuCCUGGAGGCgCGcUGCUuCGGCGGGg -3'
miRNA:   3'- -CCG------GGACCUUCG-GCuACGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 117063 0.7 0.492972
Target:  5'- aGGCCagcCUGGuuAAGCaCGA-GCUCGGCGAGu -3'
miRNA:   3'- -CCGG---GACC--UUCG-GCUaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 35922 0.7 0.492972
Target:  5'- cGGCCCcGc--GCCGcaGCCCAGCGGGc -3'
miRNA:   3'- -CCGGGaCcuuCGGCuaCGGGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.