miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 69252 0.69 0.502416
Target:  5'- aGGCgCUGGcccgcGCCGAc-CCCGGCGAGc -3'
miRNA:   3'- -CCGgGACCuu---CGGCUacGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 79391 0.69 0.502416
Target:  5'- cGGCgCUGGAucucgcuguAGUCGAgcagGCCCgugucGGCGAGc -3'
miRNA:   3'- -CCGgGACCU---------UCGGCUa---CGGG-----UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 95194 0.69 0.502416
Target:  5'- aGCCCUGGGAcccgcGCCGcccGCCCGcGCGGu -3'
miRNA:   3'- cCGGGACCUU-----CGGCua-CGGGU-CGCUc -5'
23736 5' -60.1 NC_005261.1 + 95271 0.69 0.502416
Target:  5'- -cCCCUGGAguacaucuugcGGCUGAUGgCCAGCuGGGc -3'
miRNA:   3'- ccGGGACCU-----------UCGGCUACgGGUCG-CUC- -5'
23736 5' -60.1 NC_005261.1 + 97657 0.69 0.502416
Target:  5'- cGCaCCUgGGggGCCGgcGUCC-GCGGGg -3'
miRNA:   3'- cCG-GGA-CCuuCGGCuaCGGGuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 14010 0.69 0.502416
Target:  5'- gGGCCgCUcGGuGAGCucugCGAUGgCCAGCGGGg -3'
miRNA:   3'- -CCGG-GA-CC-UUCG----GCUACgGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 1389 0.69 0.511937
Target:  5'- aGGCCaCgccGGgcGCCGcgGCCgCGGCGGc -3'
miRNA:   3'- -CCGG-Ga--CCuuCGGCuaCGG-GUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 4986 0.69 0.521532
Target:  5'- gGGCCCggaGGgcGCCGAgGCCCc-CGGGc -3'
miRNA:   3'- -CCGGGa--CCuuCGGCUaCGGGucGCUC- -5'
23736 5' -60.1 NC_005261.1 + 37267 0.69 0.521532
Target:  5'- -aUCCUGGccGAGCCG-UGCCgCGGCGAc -3'
miRNA:   3'- ccGGGACC--UUCGGCuACGG-GUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 38922 0.69 0.521532
Target:  5'- gGGCCCgcgcgccAAGCCGGcgGCCgGGCGGGc -3'
miRNA:   3'- -CCGGGacc----UUCGGCUa-CGGgUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 63602 0.69 0.521532
Target:  5'- gGGCCCUGu-GGCCgGAUGCggcucCCAGCGu- -3'
miRNA:   3'- -CCGGGACcuUCGG-CUACG-----GGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 29267 0.69 0.521532
Target:  5'- cGCCgCUGGAGggcccgcuGCUGAcGCCCuccGGCGAGg -3'
miRNA:   3'- cCGG-GACCUU--------CGGCUaCGGG---UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 75385 0.69 0.525389
Target:  5'- cGCCCUGGcgcgcgccaucgacgAGGgCGcgGCCCGGCGc- -3'
miRNA:   3'- cCGGGACC---------------UUCgGCuaCGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 68985 0.69 0.530227
Target:  5'- cGGCCCUuuucgggccgcgcGGgcGCCGcgGCUUcguuGGCGAGu -3'
miRNA:   3'- -CCGGGA-------------CCuuCGGCuaCGGG----UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 44218 0.69 0.531196
Target:  5'- cGGCCCgGGAGcgcgcgcuGCUGGccGCCCAGCGc- -3'
miRNA:   3'- -CCGGGaCCUU--------CGGCUa-CGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 35088 0.69 0.531196
Target:  5'- cGCCCUcGGAGCCGcgGUgagCGGCGAGc -3'
miRNA:   3'- cCGGGAcCUUCGGCuaCGg--GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 123346 0.69 0.53508
Target:  5'- cGGCUCgc--GGCCGAccagcgccucuaugcUGUCCAGCGAGa -3'
miRNA:   3'- -CCGGGaccuUCGGCU---------------ACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 79289 0.69 0.540924
Target:  5'- aGGCCCUGGAAGaaguuggCGA-GCCCGcGCa-- -3'
miRNA:   3'- -CCGGGACCUUCg------GCUaCGGGU-CGcuc -5'
23736 5' -60.1 NC_005261.1 + 99577 0.69 0.540924
Target:  5'- aGCUCUGG--GCCugcgcGCCCAGCGAGu -3'
miRNA:   3'- cCGGGACCuuCGGcua--CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 98120 0.69 0.550712
Target:  5'- aGGCUggGGAcGCCGcgGCaCCGGCGGc -3'
miRNA:   3'- -CCGGgaCCUuCGGCuaCG-GGUCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.