miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 2804 0.66 0.680508
Target:  5'- cGGCCg-GGAggGGCCGGgcgGCcCCAGCccGAGc -3'
miRNA:   3'- -CCGGgaCCU--UCGGCUa--CG-GGUCG--CUC- -5'
23736 5' -60.1 NC_005261.1 + 116080 0.66 0.680508
Target:  5'- cGGUCCccgUGGAuGCCGcgGUCC-GCGAc -3'
miRNA:   3'- -CCGGG---ACCUuCGGCuaCGGGuCGCUc -5'
23736 5' -60.1 NC_005261.1 + 35698 0.66 0.680508
Target:  5'- aGCCCcGGuGGGCCGGggGCUCGGUGGc -3'
miRNA:   3'- cCGGGaCC-UUCGGCUa-CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 12558 0.66 0.679512
Target:  5'- gGGCCCcGcgccgggcaacgcGggGCCGAgaggggcGCCUAGCGGa -3'
miRNA:   3'- -CCGGGaC-------------CuuCGGCUa------CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 43450 0.67 0.670536
Target:  5'- cGGCgCCUGGAcgucgccgGGCgGGUGCUgGcggaguGCGAGg -3'
miRNA:   3'- -CCG-GGACCU--------UCGgCUACGGgU------CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 92383 0.67 0.670536
Target:  5'- uGCCCaGGuaguAGCCcAUGCCCgagAGCGAc -3'
miRNA:   3'- cCGGGaCCu---UCGGcUACGGG---UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 135029 0.67 0.670536
Target:  5'- cGGCCgCggcgGcGAGGCCGAcGCCUgcGGCGGc -3'
miRNA:   3'- -CCGG-Ga---C-CUUCGGCUaCGGG--UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 2716 0.67 0.670536
Target:  5'- gGGcCCCUGGccccGGCCGAcuugcgcuugcGCCgCGGCGGGc -3'
miRNA:   3'- -CC-GGGACCu---UCGGCUa----------CGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 24118 0.67 0.670536
Target:  5'- gGGCCCgaggcGGggGUgGggGCUgGGUGGGc -3'
miRNA:   3'- -CCGGGa----CCuuCGgCuaCGGgUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 101289 0.67 0.670536
Target:  5'- gGGCCCgcGGucGUCGAUGCgcgccgUUAGCGGGu -3'
miRNA:   3'- -CCGGGa-CCuuCGGCUACG------GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 53564 0.67 0.660534
Target:  5'- cGGCCCaGGcgcacuagcGGCCGcgGgCCGGCGGc -3'
miRNA:   3'- -CCGGGaCCu--------UCGGCuaCgGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 130860 0.67 0.660534
Target:  5'- cGCCCggccGGgcGCCGcgGCCUGGCc-- -3'
miRNA:   3'- cCGGGa---CCuuCGGCuaCGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 125789 0.67 0.660534
Target:  5'- aGGCCgCUGcGAacggggcuugGGCCGggGCCgCcGCGAGc -3'
miRNA:   3'- -CCGG-GAC-CU----------UCGGCuaCGG-GuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 74414 0.67 0.660534
Target:  5'- cGGCCgCgggcgGGAgGGCCGAggagagcGCCCccccGGCGGGg -3'
miRNA:   3'- -CCGG-Ga----CCU-UCGGCUa------CGGG----UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 46466 0.67 0.650511
Target:  5'- aGGCCCUcGAAGCgcaggugcagcuCGgcGCCCuccGCGGGg -3'
miRNA:   3'- -CCGGGAcCUUCG------------GCuaCGGGu--CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 97953 0.67 0.650511
Target:  5'- cGGCaacgagGGAGGUggcggcggagCGGUGCCCGGgGAGa -3'
miRNA:   3'- -CCGgga---CCUUCG----------GCUACGGGUCgCUC- -5'
23736 5' -60.1 NC_005261.1 + 34927 0.67 0.650511
Target:  5'- cGGCCaCgcgGGGggcGGCCGGcgcgacccggGCCCGGCGGc -3'
miRNA:   3'- -CCGG-Ga--CCU---UCGGCUa---------CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 32618 0.67 0.650511
Target:  5'- cGUCCUcGGAcgacgAGCCGGgcucGCCCuggAGCGGGg -3'
miRNA:   3'- cCGGGA-CCU-----UCGGCUa---CGGG---UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 68101 0.67 0.650511
Target:  5'- aGGCCgugaaguucgggCUGGAgcugcgcgGGCCGcgGCgCGGCGAc -3'
miRNA:   3'- -CCGG------------GACCU--------UCGGCuaCGgGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 15940 0.67 0.649508
Target:  5'- gGGCCCgGGcagGAGCCGGgggcgagUGgCgGGCGGGg -3'
miRNA:   3'- -CCGGGaCC---UUCGGCU-------ACgGgUCGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.