miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 77634 0.67 0.648504
Target:  5'- uGGCCCUGGccggcgccaucGCCGAcGgCCGGCGc- -3'
miRNA:   3'- -CCGGGACCuu---------CGGCUaCgGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 58513 0.67 0.640473
Target:  5'- cGCCCgcguccaGGAGGCgGAUcgaGCCCAGCc-- -3'
miRNA:   3'- cCGGGa------CCUUCGgCUA---CGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 107672 0.67 0.640473
Target:  5'- cGGCCCcgccGGgcGuuGccGCCgCGGCGGGg -3'
miRNA:   3'- -CCGGGa---CCuuCggCuaCGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 23848 0.67 0.640473
Target:  5'- gGGCUCgccgGGGcaGGCCGGcuggggcgggcuUGCCCcgGGCGGGc -3'
miRNA:   3'- -CCGGGa---CCU--UCGGCU------------ACGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 71237 0.67 0.640473
Target:  5'- cGGCCCUcGGcggcgcAGCCGA-GCCCcGCGc- -3'
miRNA:   3'- -CCGGGA-CCu-----UCGGCUaCGGGuCGCuc -5'
23736 5' -60.1 NC_005261.1 + 23791 0.67 0.640473
Target:  5'- gGGCUCgccgGGGcaGGCCGGcuggggcgggcuUGCCCcgGGCGGGc -3'
miRNA:   3'- -CCGGGa---CCU--UCGGCU------------ACGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 24407 0.67 0.639469
Target:  5'- cGGUCCUGGggGCUcggauccucgguuGcgGUCCgcGGCGAu -3'
miRNA:   3'- -CCGGGACCuuCGG-------------CuaCGGG--UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 92230 0.67 0.634447
Target:  5'- cGGCCCcgccgagcgcgcggaUGGAGGCCaGGaagGCCCGGUa-- -3'
miRNA:   3'- -CCGGG---------------ACCUUCGG-CUa--CGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 14528 0.67 0.63043
Target:  5'- aGCCCggcGGuGGCgCGGccGCCCGGCGAc -3'
miRNA:   3'- cCGGGa--CCuUCG-GCUa-CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 64543 0.67 0.63043
Target:  5'- aGGUCCgGGAccacGaCCGAcUGCaCCAGCGGGu -3'
miRNA:   3'- -CCGGGaCCUu---C-GGCU-ACG-GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 71604 0.67 0.63043
Target:  5'- aGGCCCgcc--GCCGcgGCCCGggcGCGGGc -3'
miRNA:   3'- -CCGGGaccuuCGGCuaCGGGU---CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 118503 0.67 0.63043
Target:  5'- cGGaCCCUGGc-GCC---GCUCGGCGAGg -3'
miRNA:   3'- -CC-GGGACCuuCGGcuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 70705 0.67 0.620387
Target:  5'- cGGCCCgcgcGGGcacGGCCGAgagcacGUCCAGCa-- -3'
miRNA:   3'- -CCGGGa---CCU---UCGGCUa-----CGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 48305 0.67 0.620387
Target:  5'- aGGCCUcgGGggGCgCGucggGCCCGGgcuCGGGg -3'
miRNA:   3'- -CCGGGa-CCuuCG-GCua--CGGGUC---GCUC- -5'
23736 5' -60.1 NC_005261.1 + 89729 0.67 0.620387
Target:  5'- cGGCCgUGGAuaAGCUcaaGcUGCCCAGCu-- -3'
miRNA:   3'- -CCGGgACCU--UCGG---CuACGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 44283 0.67 0.616372
Target:  5'- gGGCCCgccgccagcggcgGGccaGGGCCGcUGCCC-GCGGGc -3'
miRNA:   3'- -CCGGGa------------CC---UUCGGCuACGGGuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 14947 0.68 0.610353
Target:  5'- uGGCgCUGGAAGCgagCGGgcgUGCCUggGGCGAc -3'
miRNA:   3'- -CCGgGACCUUCG---GCU---ACGGG--UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 33532 0.68 0.610353
Target:  5'- uGGCCCcGGGAGCaccaGggGCgCCAGCc-- -3'
miRNA:   3'- -CCGGGaCCUUCGg---CuaCG-GGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 16796 0.68 0.610353
Target:  5'- aGCCCgccaGGAAGCCGu--CCCAGaaCGGGg -3'
miRNA:   3'- cCGGGa---CCUUCGGCuacGGGUC--GCUC- -5'
23736 5' -60.1 NC_005261.1 + 53658 0.68 0.610353
Target:  5'- aGGCggCCUGGccgcGGGUCGcgGCCucgaCAGCGAGa -3'
miRNA:   3'- -CCG--GGACC----UUCGGCuaCGG----GUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.