miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 28991 0.68 0.607345
Target:  5'- -aCUCUGGGgccgccgacuccggGGCCGAUGCCaaagacGCGAGg -3'
miRNA:   3'- ccGGGACCU--------------UCGGCUACGGgu----CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 17068 0.68 0.600334
Target:  5'- cGUCCUGGAAGggcgaCGGgauggGCCCGGUGGu -3'
miRNA:   3'- cCGGGACCUUCg----GCUa----CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 72648 0.68 0.600334
Target:  5'- -cCCCUGGggGCCGccucggGCCCccccGGCGu- -3'
miRNA:   3'- ccGGGACCuuCGGCua----CGGG----UCGCuc -5'
23736 5' -60.1 NC_005261.1 + 135065 0.68 0.596333
Target:  5'- cGGCCCgccgcuuuccggcGGcGGGCuCGcgGCCCGGCGGc -3'
miRNA:   3'- -CCGGGa------------CC-UUCG-GCuaCGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 79132 0.68 0.590339
Target:  5'- cGCCa-GGAAGgCGGccaccaGCCCGGCGAGc -3'
miRNA:   3'- cCGGgaCCUUCgGCUa-----CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 28566 0.68 0.590339
Target:  5'- cGGCCCgccGGGCCGAggcgcgcgaGCgCCGGCGGGc -3'
miRNA:   3'- -CCGGGaccUUCGGCUa--------CG-GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 2971 0.68 0.590339
Target:  5'- gGGCCCgggcuGAGGCUGGggcucgGCCUGGCGGc -3'
miRNA:   3'- -CCGGGac---CUUCGGCUa-----CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 30761 0.68 0.580372
Target:  5'- gGGCCCUaGuccgGGCCGGaGCCCGGCc-- -3'
miRNA:   3'- -CCGGGAcCu---UCGGCUaCGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 38178 0.68 0.580372
Target:  5'- cGGCugCCUGGAGGCCuGGgcgcGCCgCGGCGuGc -3'
miRNA:   3'- -CCG--GGACCUUCGG-CUa---CGG-GUCGCuC- -5'
23736 5' -60.1 NC_005261.1 + 88174 0.68 0.580372
Target:  5'- gGGCCggGGcgacGCCGGcgGCgCCGGCGAGg -3'
miRNA:   3'- -CCGGgaCCuu--CGGCUa-CG-GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 28720 0.68 0.580372
Target:  5'- gGGCCC-GGggGCCucGgcGCCCucCGAGg -3'
miRNA:   3'- -CCGGGaCCuuCGG--CuaCGGGucGCUC- -5'
23736 5' -60.1 NC_005261.1 + 1174 0.68 0.578383
Target:  5'- cGGCCCgcgccgcggccGggGCCGggGCCgGGCGcGg -3'
miRNA:   3'- -CCGGGac---------CuuCGGCuaCGGgUCGCuC- -5'
23736 5' -60.1 NC_005261.1 + 87768 0.68 0.577389
Target:  5'- gGGCCCUGGcgcGagggucaccgucuuGGCCGccgcguccAUGgCCGGCGGGg -3'
miRNA:   3'- -CCGGGACC---U--------------UCGGC--------UACgGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 135318 0.68 0.576395
Target:  5'- cGCCCUGGGcGGCCGugcuggacuuugGCCCggAGCGGu -3'
miRNA:   3'- cCGGGACCU-UCGGCua----------CGGG--UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 127321 0.68 0.570442
Target:  5'- gGGCCCUgccgcccgcGGggGCCGGaGC--GGCGGGg -3'
miRNA:   3'- -CCGGGA---------CCuuCGGCUaCGggUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 29789 0.68 0.570442
Target:  5'- uGGCCUacccGGAGGCCGgcGCC-GGCGGc -3'
miRNA:   3'- -CCGGGa---CCUUCGGCuaCGGgUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 98120 0.69 0.550712
Target:  5'- aGGCUggGGAcGCCGcgGCaCCGGCGGc -3'
miRNA:   3'- -CCGGgaCCUuCGGCuaCG-GGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 99577 0.69 0.540924
Target:  5'- aGCUCUGG--GCCugcgcGCCCAGCGAGu -3'
miRNA:   3'- cCGGGACCuuCGGcua--CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 79289 0.69 0.540924
Target:  5'- aGGCCCUGGAAGaaguuggCGA-GCCCGcGCa-- -3'
miRNA:   3'- -CCGGGACCUUCg------GCUaCGGGU-CGcuc -5'
23736 5' -60.1 NC_005261.1 + 123346 0.69 0.53508
Target:  5'- cGGCUCgc--GGCCGAccagcgccucuaugcUGUCCAGCGAGa -3'
miRNA:   3'- -CCGGGaccuUCGGCU---------------ACGGGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.