miRNA display CGI


Results 1 - 20 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 345 0.66 0.710158
Target:  5'- cGGCCCgc--AGCCcggcGcgGCCCGGCGGc -3'
miRNA:   3'- -CCGGGaccuUCGG----CuaCGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 1174 0.68 0.578383
Target:  5'- cGGCCCgcgccgcggccGggGCCGggGCCgGGCGcGg -3'
miRNA:   3'- -CCGGGac---------CuuCGGCuaCGGgUCGCuC- -5'
23736 5' -60.1 NC_005261.1 + 1240 0.75 0.246847
Target:  5'- cGGCCCcgGGAAGcCCGAguccgUGCCCGGgGGu -3'
miRNA:   3'- -CCGGGa-CCUUC-GGCU-----ACGGGUCgCUc -5'
23736 5' -60.1 NC_005261.1 + 1389 0.69 0.511937
Target:  5'- aGGCCaCgccGGgcGCCGcgGCCgCGGCGGc -3'
miRNA:   3'- -CCGG-Ga--CCuuCGGCuaCGG-GUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 2168 0.66 0.729621
Target:  5'- cGGCCCaGGcgugcGAGUCGgcGCUCAGCa-- -3'
miRNA:   3'- -CCGGGaCC-----UUCGGCuaCGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 2716 0.67 0.670536
Target:  5'- gGGcCCCUGGccccGGCCGAcuugcgcuugcGCCgCGGCGGGc -3'
miRNA:   3'- -CC-GGGACCu---UCGGCUa----------CGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 2804 0.66 0.680508
Target:  5'- cGGCCg-GGAggGGCCGGgcgGCcCCAGCccGAGc -3'
miRNA:   3'- -CCGGgaCCU--UCGGCUa--CG-GGUCG--CUC- -5'
23736 5' -60.1 NC_005261.1 + 2971 0.68 0.590339
Target:  5'- gGGCCCgggcuGAGGCUGGggcucgGCCUGGCGGc -3'
miRNA:   3'- -CCGGGac---CUUCGGCUa-----CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 4550 0.74 0.282607
Target:  5'- gGGCCCUGGccuuGGCUGGauccgcgggcggGUCCGGCGGGg -3'
miRNA:   3'- -CCGGGACCu---UCGGCUa-----------CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 4986 0.69 0.521532
Target:  5'- gGGCCCggaGGgcGCCGAgGCCCc-CGGGc -3'
miRNA:   3'- -CCGGGa--CCuuCGGCUaCGGGucGCUC- -5'
23736 5' -60.1 NC_005261.1 + 5132 0.66 0.690441
Target:  5'- cGGCCCgccGGcgcucgcgcGCCucgGCCCGGCGGGc -3'
miRNA:   3'- -CCGGGa--CCuu-------CGGcuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 6240 0.66 0.719925
Target:  5'- cGCCCgGGGagGGCC--UGCCCGccccGCGGGg -3'
miRNA:   3'- cCGGGaCCU--UCGGcuACGGGU----CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 9841 0.74 0.283911
Target:  5'- cGGCCCgcccgGGGcaagcccgccccAGCCGGccUGCCCcGGCGAGc -3'
miRNA:   3'- -CCGGGa----CCU------------UCGGCU--ACGGG-UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 9898 0.74 0.283911
Target:  5'- cGGCCCgcccgGGGcaagcccgccccAGCCGGccUGCCCcGGCGAGc -3'
miRNA:   3'- -CCGGGa----CCU------------UCGGCU--ACGGG-UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 12558 0.66 0.679512
Target:  5'- gGGCCCcGcgccgggcaacgcGggGCCGAgaggggcGCCUAGCGGa -3'
miRNA:   3'- -CCGGGaC-------------CuuCGGCUa------CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 12731 0.71 0.429378
Target:  5'- gGGCCCgccGGcccccuGGgCGG-GCCCGGCGAGg -3'
miRNA:   3'- -CCGGGa--CCu-----UCgGCUaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 13782 0.66 0.719925
Target:  5'- cGCCCUc---GCCc-UGCCCGGCGGGg -3'
miRNA:   3'- cCGGGAccuuCGGcuACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 14010 0.69 0.502416
Target:  5'- gGGCCgCUcGGuGAGCucugCGAUGgCCAGCGGGg -3'
miRNA:   3'- -CCGG-GA-CC-UUCG----GCUACgGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 14528 0.67 0.63043
Target:  5'- aGCCCggcGGuGGCgCGGccGCCCGGCGAc -3'
miRNA:   3'- cCGGGa--CCuUCG-GCUa-CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 14947 0.68 0.610353
Target:  5'- uGGCgCUGGAAGCgagCGGgcgUGCCUggGGCGAc -3'
miRNA:   3'- -CCGgGACCUUCG---GCU---ACGGG--UCGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.