miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 15651 0.71 0.429378
Target:  5'- cGCCCggccGGGAGCUGGUGCuCCAG-GAa -3'
miRNA:   3'- cCGGGa---CCUUCGGCUACG-GGUCgCUc -5'
23736 5' -60.1 NC_005261.1 + 15780 0.66 0.710158
Target:  5'- aGGCCgCUGGcGGgCGccGCCCGcGCGGc -3'
miRNA:   3'- -CCGG-GACCuUCgGCuaCGGGU-CGCUc -5'
23736 5' -60.1 NC_005261.1 + 15940 0.67 0.649508
Target:  5'- gGGCCCgGGcagGAGCCGGgggcgagUGgCgGGCGGGg -3'
miRNA:   3'- -CCGGGaCC---UUCGGCU-------ACgGgUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 16286 0.76 0.219102
Target:  5'- cGCCCggggGGgcGCCGucggGCCCAGCGGc -3'
miRNA:   3'- cCGGGa---CCuuCGGCua--CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 16796 0.68 0.610353
Target:  5'- aGCCCgccaGGAAGCCGu--CCCAGaaCGGGg -3'
miRNA:   3'- cCGGGa---CCUUCGGCuacGGGUC--GCUC- -5'
23736 5' -60.1 NC_005261.1 + 17068 0.68 0.600334
Target:  5'- cGUCCUGGAAGggcgaCGGgauggGCCCGGUGGu -3'
miRNA:   3'- cCGGGACCUUCg----GCUa----CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 22662 0.7 0.466066
Target:  5'- cGGCgCCUGGGcggcgcccgagugccGCCGGgggacggGCCCGGCGAc -3'
miRNA:   3'- -CCG-GGACCUu--------------CGGCUa------CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 22761 0.7 0.492032
Target:  5'- cGGCCCacgcgucUGGggGCgG--GCCCcGCGAGa -3'
miRNA:   3'- -CCGGG-------ACCuuCGgCuaCGGGuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 23008 0.66 0.719925
Target:  5'- gGGCCC-GGAGGCg---GCCC-GCGAa -3'
miRNA:   3'- -CCGGGaCCUUCGgcuaCGGGuCGCUc -5'
23736 5' -60.1 NC_005261.1 + 23165 0.66 0.719925
Target:  5'- gGGCCCggcaGGcgcGCCGGggGCgaCAGCGAGc -3'
miRNA:   3'- -CCGGGa---CCuu-CGGCUa-CGg-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 23512 0.84 0.062832
Target:  5'- gGGCCCUGGGAGCaCGcgGUCgGGCGAGc -3'
miRNA:   3'- -CCGGGACCUUCG-GCuaCGGgUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 23791 0.67 0.640473
Target:  5'- gGGCUCgccgGGGcaGGCCGGcuggggcgggcuUGCCCcgGGCGGGc -3'
miRNA:   3'- -CCGGGa---CCU--UCGGCU------------ACGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 23848 0.67 0.640473
Target:  5'- gGGCUCgccgGGGcaGGCCGGcuggggcgggcuUGCCCcgGGCGGGc -3'
miRNA:   3'- -CCGGGa---CCU--UCGGCU------------ACGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 24118 0.67 0.670536
Target:  5'- gGGCCCgaggcGGggGUgGggGCUgGGUGGGc -3'
miRNA:   3'- -CCGGGa----CCuuCGgCuaCGGgUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 24407 0.67 0.639469
Target:  5'- cGGUCCUGGggGCUcggauccucgguuGcgGUCCgcGGCGAu -3'
miRNA:   3'- -CCGGGACCuuCGG-------------CuaCGGG--UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 28522 0.66 0.680508
Target:  5'- cGGCCCggagGGggGCCcgGAggagGaCCCGGCc-- -3'
miRNA:   3'- -CCGGGa---CCuuCGG--CUa---C-GGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 28566 0.68 0.590339
Target:  5'- cGGCCCgccGGGCCGAggcgcgcgaGCgCCGGCGGGc -3'
miRNA:   3'- -CCGGGaccUUCGGCUa--------CG-GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 28720 0.68 0.580372
Target:  5'- gGGCCC-GGggGCCucGgcGCCCucCGAGg -3'
miRNA:   3'- -CCGGGaCCuuCGG--CuaCGGGucGCUC- -5'
23736 5' -60.1 NC_005261.1 + 28991 0.68 0.607345
Target:  5'- -aCUCUGGGgccgccgacuccggGGCCGAUGCCaaagacGCGAGg -3'
miRNA:   3'- ccGGGACCU--------------UCGGCUACGGgu----CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 29267 0.69 0.521532
Target:  5'- cGCCgCUGGAGggcccgcuGCUGAcGCCCuccGGCGAGg -3'
miRNA:   3'- cCGG-GACCUU--------CGGCUaCGGG---UCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.