miRNA display CGI


Results 41 - 60 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 29789 0.68 0.570442
Target:  5'- uGGCCUacccGGAGGCCGgcGCC-GGCGGc -3'
miRNA:   3'- -CCGGGa---CCUUCGGCuaCGGgUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 30358 0.71 0.403637
Target:  5'- cGGCCCUGaAGGCCGGcgcGCCgGGCGc- -3'
miRNA:   3'- -CCGGGACcUUCGGCUa--CGGgUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 30478 0.7 0.474337
Target:  5'- gGGaCgaGGAGGCCGggGCcucggaaaCCAGCGAGg -3'
miRNA:   3'- -CCgGgaCCUUCGGCuaCG--------GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 30761 0.68 0.580372
Target:  5'- gGGCCCUaGuccgGGCCGGaGCCCGGCc-- -3'
miRNA:   3'- -CCGGGAcCu---UCGGCUaCGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 31425 0.74 0.264854
Target:  5'- uGCCCggGGAGGCgcuggcggCGccGCCCGGCGAGg -3'
miRNA:   3'- cCGGGa-CCUUCG--------GCuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 31472 0.77 0.171567
Target:  5'- cGGCCUgagUGGccGCCGGUGCgCGGCGGGc -3'
miRNA:   3'- -CCGGG---ACCuuCGGCUACGgGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 32361 0.66 0.690441
Target:  5'- gGGCCCgcgGGAGacGCUGGUGCaggcgCGGCGcGg -3'
miRNA:   3'- -CCGGGa--CCUU--CGGCUACGg----GUCGCuC- -5'
23736 5' -60.1 NC_005261.1 + 32618 0.67 0.650511
Target:  5'- cGUCCUcGGAcgacgAGCCGGgcucGCCCuggAGCGGGg -3'
miRNA:   3'- cCGGGA-CCU-----UCGGCUa---CGGG---UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 33532 0.68 0.610353
Target:  5'- uGGCCCcGGGAGCaccaGggGCgCCAGCc-- -3'
miRNA:   3'- -CCGGGaCCUUCGg---CuaCG-GGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 34927 0.67 0.650511
Target:  5'- cGGCCaCgcgGGGggcGGCCGGcgcgacccggGCCCGGCGGc -3'
miRNA:   3'- -CCGG-Ga--CCU---UCGGCUa---------CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 35088 0.69 0.531196
Target:  5'- cGCCCUcGGAGCCGcgGUgagCGGCGAGc -3'
miRNA:   3'- cCGGGAcCUUCGGCuaCGg--GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 35698 0.66 0.680508
Target:  5'- aGCCCcGGuGGGCCGGggGCUCGGUGGc -3'
miRNA:   3'- cCGGGaCC-UUCGGCUa-CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 35922 0.7 0.492972
Target:  5'- cGGCCCcGc--GCCGcaGCCCAGCGGGc -3'
miRNA:   3'- -CCGGGaCcuuCGGCuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 37267 0.69 0.521532
Target:  5'- -aUCCUGGccGAGCCG-UGCCgCGGCGAc -3'
miRNA:   3'- ccGGGACC--UUCGGCuACGG-GUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 38178 0.68 0.580372
Target:  5'- cGGCugCCUGGAGGCCuGGgcgcGCCgCGGCGuGc -3'
miRNA:   3'- -CCG--GGACCUUCGG-CUa---CGG-GUCGCuC- -5'
23736 5' -60.1 NC_005261.1 + 38339 0.7 0.474337
Target:  5'- uGCUCUGG-GGCgCGcacGCCCAGCGGGc -3'
miRNA:   3'- cCGGGACCuUCG-GCua-CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 38922 0.69 0.521532
Target:  5'- gGGCCCgcgcgccAAGCCGGcgGCCgGGCGGGc -3'
miRNA:   3'- -CCGGGacc----UUCGGCUa-CGGgUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 39392 0.72 0.378893
Target:  5'- cGGCCCUGGcGGCgaccCGAgcCCCAGCGGc -3'
miRNA:   3'- -CCGGGACCuUCG----GCUacGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 40240 0.72 0.382133
Target:  5'- uGGCCC-GGggGCCgugagcgccauggcgGcgGCCgCGGCGGGg -3'
miRNA:   3'- -CCGGGaCCuuCGG---------------CuaCGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 40486 0.73 0.325239
Target:  5'- aGGCCCUGGGAGCgGGcgauggucaUGgCCAGCuucGAGc -3'
miRNA:   3'- -CCGGGACCUUCGgCU---------ACgGGUCG---CUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.