miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 43450 0.67 0.670536
Target:  5'- cGGCgCCUGGAcgucgccgGGCgGGUGCUgGcggaguGCGAGg -3'
miRNA:   3'- -CCG-GGACCU--------UCGgCUACGGgU------CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 43823 0.66 0.719925
Target:  5'- cGCCCUccGuGGAGaaGcUGCUCGGCGAGg -3'
miRNA:   3'- cCGGGA--C-CUUCggCuACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 44218 0.69 0.531196
Target:  5'- cGGCCCgGGAGcgcgcgcuGCUGGccGCCCAGCGc- -3'
miRNA:   3'- -CCGGGaCCUU--------CGGCUa-CGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 44283 0.67 0.616372
Target:  5'- gGGCCCgccgccagcggcgGGccaGGGCCGcUGCCC-GCGGGc -3'
miRNA:   3'- -CCGGGa------------CC---UUCGGCuACGGGuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 45639 0.76 0.22443
Target:  5'- gGGCCCgcgccGGAGCa-GUGCCCAGCGGGc -3'
miRNA:   3'- -CCGGGac---CUUCGgcUACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 46466 0.67 0.650511
Target:  5'- aGGCCCUcGAAGCgcaggugcagcuCGgcGCCCuccGCGGGg -3'
miRNA:   3'- -CCGGGAcCUUCG------------GCuaCGGGu--CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 48305 0.67 0.620387
Target:  5'- aGGCCUcgGGggGCgCGucggGCCCGGgcuCGGGg -3'
miRNA:   3'- -CCGGGa-CCuuCG-GCua--CGGGUC---GCUC- -5'
23736 5' -60.1 NC_005261.1 + 49214 0.73 0.310983
Target:  5'- gGGCg--GGAGGCCGgcGCCCAGCGc- -3'
miRNA:   3'- -CCGggaCCUUCGGCuaCGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 50999 0.66 0.700327
Target:  5'- cGGCgCgUGGGcgcGGCgGGaGCUCGGCGAGc -3'
miRNA:   3'- -CCG-GgACCU---UCGgCUaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 53564 0.67 0.660534
Target:  5'- cGGCCCaGGcgcacuagcGGCCGcgGgCCGGCGGc -3'
miRNA:   3'- -CCGGGaCCu--------UCGGCuaCgGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 53658 0.68 0.610353
Target:  5'- aGGCggCCUGGccgcGGGUCGcgGCCucgaCAGCGAGa -3'
miRNA:   3'- -CCG--GGACC----UUCGGCuaCGG----GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 58513 0.67 0.640473
Target:  5'- cGCCCgcguccaGGAGGCgGAUcgaGCCCAGCc-- -3'
miRNA:   3'- cCGGGa------CCUUCGgCUA---CGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 60170 0.66 0.690441
Target:  5'- uGCCgUGGAAGCgCGucugcGCCgCGGCGGa -3'
miRNA:   3'- cCGGgACCUUCG-GCua---CGG-GUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 63018 0.75 0.258736
Target:  5'- cGCCCgcgcGGgcGCCGgcGCCCgcGGCGAGg -3'
miRNA:   3'- cCGGGa---CCuuCGGCuaCGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 63602 0.69 0.521532
Target:  5'- gGGCCCUGu-GGCCgGAUGCggcucCCAGCGu- -3'
miRNA:   3'- -CCGGGACcuUCGG-CUACG-----GGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 64543 0.67 0.63043
Target:  5'- aGGUCCgGGAccacGaCCGAcUGCaCCAGCGGGu -3'
miRNA:   3'- -CCGGGaCCUu---C-GGCU-ACG-GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 68101 0.67 0.650511
Target:  5'- aGGCCgugaaguucgggCUGGAgcugcgcgGGCCGcgGCgCGGCGAc -3'
miRNA:   3'- -CCGG------------GACCU--------UCGGCuaCGgGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 68985 0.69 0.530227
Target:  5'- cGGCCCUuuucgggccgcgcGGgcGCCGcgGCUUcguuGGCGAGu -3'
miRNA:   3'- -CCGGGA-------------CCuuCGGCuaCGGG----UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 69252 0.69 0.502416
Target:  5'- aGGCgCUGGcccgcGCCGAc-CCCGGCGAGc -3'
miRNA:   3'- -CCGgGACCuu---CGGCUacGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 70705 0.67 0.620387
Target:  5'- cGGCCCgcgcGGGcacGGCCGAgagcacGUCCAGCa-- -3'
miRNA:   3'- -CCGGGa---CCU---UCGGCUa-----CGGGUCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.