miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 138016 0.66 0.710158
Target:  5'- cGGCCCgc--AGCCcggcGcgGCCCGGCGGc -3'
miRNA:   3'- -CCGGGaccuUCGG----CuaCGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 135318 0.68 0.576395
Target:  5'- cGCCCUGGGcGGCCGugcuggacuuugGCCCggAGCGGu -3'
miRNA:   3'- cCGGGACCU-UCGGCua----------CGGG--UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 135065 0.68 0.596333
Target:  5'- cGGCCCgccgcuuuccggcGGcGGGCuCGcgGCCCGGCGGc -3'
miRNA:   3'- -CCGGGa------------CC-UUCG-GCuaCGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 135029 0.67 0.670536
Target:  5'- cGGCCgCggcgGcGAGGCCGAcGCCUgcGGCGGc -3'
miRNA:   3'- -CCGG-Ga---C-CUUCGGCUaCGGG--UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 132591 0.73 0.332546
Target:  5'- cGCCCgcGGAcGCCcg-GCCCGGCGAGc -3'
miRNA:   3'- cCGGGa-CCUuCGGcuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 130860 0.67 0.660534
Target:  5'- cGCCCggccGGgcGCCGcgGCCUGGCc-- -3'
miRNA:   3'- cCGGGa---CCuuCGGCuaCGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 129821 0.71 0.412109
Target:  5'- cGCCCUGc--GCCcgGAUGCCCAGCGc- -3'
miRNA:   3'- cCGGGACcuuCGG--CUACGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 127321 0.68 0.570442
Target:  5'- gGGCCCUgccgcccgcGGggGCCGGaGC--GGCGGGg -3'
miRNA:   3'- -CCGGGA---------CCuuCGGCUaCGggUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 125789 0.67 0.660534
Target:  5'- aGGCCgCUGcGAacggggcuugGGCCGggGCCgCcGCGAGc -3'
miRNA:   3'- -CCGG-GAC-CU----------UCGGCuaCGG-GuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 125682 0.7 0.465152
Target:  5'- cGCCgaaUGGGuuuGCCGGgcuugGCCCGGCGAc -3'
miRNA:   3'- cCGGg--ACCUu--CGGCUa----CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 123346 0.69 0.53508
Target:  5'- cGGCUCgc--GGCCGAccagcgccucuaugcUGUCCAGCGAGa -3'
miRNA:   3'- -CCGGGaccuUCGGCU---------------ACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 121765 0.66 0.729621
Target:  5'- aGCCCgagcgcggUGGGguGGCCGcgG-CCGGCGGGc -3'
miRNA:   3'- cCGGG--------ACCU--UCGGCuaCgGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 119524 0.7 0.465152
Target:  5'- cGGCCCcGGuccccgcGGCCGAgcaagGCCCcgccGCGGGg -3'
miRNA:   3'- -CCGGGaCCu------UCGGCUa----CGGGu---CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 118503 0.67 0.63043
Target:  5'- cGGaCCCUGGc-GCC---GCUCGGCGAGg -3'
miRNA:   3'- -CC-GGGACCuuCGGcuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 117703 0.71 0.429378
Target:  5'- cGGCCCU-GAGGCCGGcgcgcggGCCCgcaAGCGGc -3'
miRNA:   3'- -CCGGGAcCUUCGGCUa------CGGG---UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 117369 0.7 0.492972
Target:  5'- aGGCcgcccuCCUGGAGGCgCGcUGCUuCGGCGGGg -3'
miRNA:   3'- -CCG------GGACCUUCG-GCuACGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 117063 0.7 0.492972
Target:  5'- aGGCCagcCUGGuuAAGCaCGA-GCUCGGCGAGu -3'
miRNA:   3'- -CCGG---GACC--UUCG-GCUaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 116080 0.66 0.680508
Target:  5'- cGGUCCccgUGGAuGCCGcgGUCC-GCGAc -3'
miRNA:   3'- -CCGGG---ACCUuCGGCuaCGGGuCGCUc -5'
23736 5' -60.1 NC_005261.1 + 109861 0.75 0.241074
Target:  5'- cGGCuCCUGGggGCagCGggGCCCgcgGGCGGGc -3'
miRNA:   3'- -CCG-GGACCuuCG--GCuaCGGG---UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 109248 0.73 0.310983
Target:  5'- cGGCCCagUGcGggGCCacGAaGUCCAGCGAGc -3'
miRNA:   3'- -CCGGG--AC-CuuCGG--CUaCGGGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.