miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 107672 0.67 0.640473
Target:  5'- cGGCCCcgccGGgcGuuGccGCCgCGGCGGGg -3'
miRNA:   3'- -CCGGGa---CCuuCggCuaCGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 106576 0.66 0.690441
Target:  5'- cGGCCCcGG-GGCCGccGCgCGGCGc- -3'
miRNA:   3'- -CCGGGaCCuUCGGCuaCGgGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 101289 0.67 0.670536
Target:  5'- gGGCCCgcGGucGUCGAUGCgcgccgUUAGCGGGu -3'
miRNA:   3'- -CCGGGa-CCuuCGGCUACG------GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 99577 0.69 0.540924
Target:  5'- aGCUCUGG--GCCugcgcGCCCAGCGAGu -3'
miRNA:   3'- cCGGGACCuuCGGcua--CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 98725 0.74 0.283911
Target:  5'- cGGCCUUGGggGCaCGcgGCCgC-GCGGGc -3'
miRNA:   3'- -CCGGGACCuuCG-GCuaCGG-GuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 98303 0.66 0.719925
Target:  5'- cGGCCUcGGggGCgGgcGCcgccgCCAGCGGc -3'
miRNA:   3'- -CCGGGaCCuuCGgCuaCG-----GGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 98120 0.69 0.550712
Target:  5'- aGGCUggGGAcGCCGcgGCaCCGGCGGc -3'
miRNA:   3'- -CCGGgaCCUuCGGCuaCG-GGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 97953 0.67 0.650511
Target:  5'- cGGCaacgagGGAGGUggcggcggagCGGUGCCCGGgGAGa -3'
miRNA:   3'- -CCGgga---CCUUCG----------GCUACGGGUCgCUC- -5'
23736 5' -60.1 NC_005261.1 + 97657 0.69 0.502416
Target:  5'- cGCaCCUgGGggGCCGgcGUCC-GCGGGg -3'
miRNA:   3'- cCG-GGA-CCuuCGGCuaCGGGuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 95271 0.69 0.502416
Target:  5'- -cCCCUGGAguacaucuugcGGCUGAUGgCCAGCuGGGc -3'
miRNA:   3'- ccGGGACCU-----------UCGGCUACgGGUCG-CUC- -5'
23736 5' -60.1 NC_005261.1 + 95194 0.69 0.502416
Target:  5'- aGCCCUGGGAcccgcGCCGcccGCCCGcGCGGu -3'
miRNA:   3'- cCGGGACCUU-----CGGCua-CGGGU-CGCUc -5'
23736 5' -60.1 NC_005261.1 + 92763 0.66 0.729621
Target:  5'- cGCCgCUcGGAccgGGCCGA-GCCCGGgcuCGGGg -3'
miRNA:   3'- cCGG-GA-CCU---UCGGCUaCGGGUC---GCUC- -5'
23736 5' -60.1 NC_005261.1 + 92383 0.67 0.670536
Target:  5'- uGCCCaGGuaguAGCCcAUGCCCgagAGCGAc -3'
miRNA:   3'- cCGGGaCCu---UCGGcUACGGG---UCGCUc -5'
23736 5' -60.1 NC_005261.1 + 92230 0.67 0.634447
Target:  5'- cGGCCCcgccgagcgcgcggaUGGAGGCCaGGaagGCCCGGUa-- -3'
miRNA:   3'- -CCGGG---------------ACCUUCGG-CUa--CGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 91134 0.75 0.229867
Target:  5'- cGGCCgaGGccucAGCCGugccGCCCGGCGAGu -3'
miRNA:   3'- -CCGGgaCCu---UCGGCua--CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 90388 0.72 0.387027
Target:  5'- aGGCCCcgccgGcGggGCUGgcGCCCGGCGcGGa -3'
miRNA:   3'- -CCGGGa----C-CuuCGGCuaCGGGUCGC-UC- -5'
23736 5' -60.1 NC_005261.1 + 90098 0.72 0.370874
Target:  5'- gGGCCCguucgccGGcuGGGCCGAcgcgGCCCgcGGCGAGg -3'
miRNA:   3'- -CCGGGa------CC--UUCGGCUa---CGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 89729 0.67 0.620387
Target:  5'- cGGCCgUGGAuaAGCUcaaGcUGCCCAGCu-- -3'
miRNA:   3'- -CCGGgACCU--UCGG---CuACGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 88782 0.73 0.318051
Target:  5'- cGGCCCUGGccGCCGgcGCCgcgCAGCaGGa -3'
miRNA:   3'- -CCGGGACCuuCGGCuaCGG---GUCGcUC- -5'
23736 5' -60.1 NC_005261.1 + 88174 0.68 0.580372
Target:  5'- gGGCCggGGcgacGCCGGcgGCgCCGGCGAGg -3'
miRNA:   3'- -CCGGgaCCuu--CGGCUa-CG-GGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.