miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 87768 0.68 0.577389
Target:  5'- gGGCCCUGGcgcGagggucaccgucuuGGCCGccgcguccAUGgCCGGCGGGg -3'
miRNA:   3'- -CCGGGACC---U--------------UCGGC--------UACgGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 86215 0.66 0.719925
Target:  5'- cGCgCCgaaccgGGGcAGCCGGUGCCgCAGcCGAu -3'
miRNA:   3'- cCG-GGa-----CCU-UCGGCUACGG-GUC-GCUc -5'
23736 5' -60.1 NC_005261.1 + 79391 0.69 0.502416
Target:  5'- cGGCgCUGGAucucgcuguAGUCGAgcagGCCCgugucGGCGAGc -3'
miRNA:   3'- -CCGgGACCU---------UCGGCUa---CGGG-----UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 79289 0.69 0.540924
Target:  5'- aGGCCCUGGAAGaaguuggCGA-GCCCGcGCa-- -3'
miRNA:   3'- -CCGGGACCUUCg------GCUaCGGGU-CGcuc -5'
23736 5' -60.1 NC_005261.1 + 79132 0.68 0.590339
Target:  5'- cGCCa-GGAAGgCGGccaccaGCCCGGCGAGc -3'
miRNA:   3'- cCGGgaCCUUCgGCUa-----CGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 77634 0.67 0.648504
Target:  5'- uGGCCCUGGccggcgccaucGCCGAcGgCCGGCGc- -3'
miRNA:   3'- -CCGGGACCuu---------CGGCUaCgGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 77049 0.73 0.318051
Target:  5'- cGGCCCUcGGcgaccgcgccuGGCCGGUGCCgC-GCGAGg -3'
miRNA:   3'- -CCGGGA-CCu----------UCGGCUACGG-GuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 75822 0.66 0.719925
Target:  5'- uGCCC-GGcgcGGCCGc-GCCCGGgGAGg -3'
miRNA:   3'- cCGGGaCCu--UCGGCuaCGGGUCgCUC- -5'
23736 5' -60.1 NC_005261.1 + 75385 0.69 0.525389
Target:  5'- cGCCCUGGcgcgcgccaucgacgAGGgCGcgGCCCGGCGc- -3'
miRNA:   3'- cCGGGACC---------------UUCgGCuaCGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 74414 0.67 0.660534
Target:  5'- cGGCCgCgggcgGGAgGGCCGAggagagcGCCCccccGGCGGGg -3'
miRNA:   3'- -CCGG-Ga----CCU-UCGGCUa------CGGG----UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 74126 0.77 0.188903
Target:  5'- uGGUCCUGGc-GCCGGUGCugguguucgucucCCAGCGGGg -3'
miRNA:   3'- -CCGGGACCuuCGGCUACG-------------GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 72745 0.77 0.180272
Target:  5'- cGGCCCgcaUGGcGGGCCGcAUGCCCAGCa-- -3'
miRNA:   3'- -CCGGG---ACC-UUCGGC-UACGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 72648 0.68 0.600334
Target:  5'- -cCCCUGGggGCCGccucggGCCCccccGGCGu- -3'
miRNA:   3'- ccGGGACCuuCGGCua----CGGG----UCGCuc -5'
23736 5' -60.1 NC_005261.1 + 71604 0.67 0.63043
Target:  5'- aGGCCCgcc--GCCGcgGCCCGggcGCGGGc -3'
miRNA:   3'- -CCGGGaccuuCGGCuaCGGGU---CGCUC- -5'
23736 5' -60.1 NC_005261.1 + 71237 0.67 0.640473
Target:  5'- cGGCCCUcGGcggcgcAGCCGA-GCCCcGCGc- -3'
miRNA:   3'- -CCGGGA-CCu-----UCGGCUaCGGGuCGCuc -5'
23736 5' -60.1 NC_005261.1 + 71055 0.7 0.483611
Target:  5'- cGCCgUGGGccAGCCGccGCgCGGCGGGc -3'
miRNA:   3'- cCGGgACCU--UCGGCuaCGgGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 70705 0.67 0.620387
Target:  5'- cGGCCCgcgcGGGcacGGCCGAgagcacGUCCAGCa-- -3'
miRNA:   3'- -CCGGGa---CCU---UCGGCUa-----CGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 69252 0.69 0.502416
Target:  5'- aGGCgCUGGcccgcGCCGAc-CCCGGCGAGc -3'
miRNA:   3'- -CCGgGACCuu---CGGCUacGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 68985 0.69 0.530227
Target:  5'- cGGCCCUuuucgggccgcgcGGgcGCCGcgGCUUcguuGGCGAGu -3'
miRNA:   3'- -CCGGGA-------------CCuuCGGCuaCGGG----UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 68101 0.67 0.650511
Target:  5'- aGGCCgugaaguucgggCUGGAgcugcgcgGGCCGcgGCgCGGCGAc -3'
miRNA:   3'- -CCGG------------GACCU--------UCGGCuaCGgGUCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.