miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23736 5' -60.1 NC_005261.1 + 45639 0.76 0.22443
Target:  5'- gGGCCCgcgccGGAGCa-GUGCCCAGCGGGc -3'
miRNA:   3'- -CCGGGac---CUUCGgcUACGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 16286 0.76 0.219102
Target:  5'- cGCCCggggGGgcGCCGucggGCCCAGCGGc -3'
miRNA:   3'- cCGGGa---CCuuCGGCua--CGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 74126 0.77 0.188903
Target:  5'- uGGUCCUGGc-GCCGGUGCugguguucgucucCCAGCGGGg -3'
miRNA:   3'- -CCGGGACCuuCGGCUACG-------------GGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 72745 0.77 0.180272
Target:  5'- cGGCCCgcaUGGcGGGCCGcAUGCCCAGCa-- -3'
miRNA:   3'- -CCGGG---ACC-UUCGGC-UACGGGUCGcuc -5'
23736 5' -60.1 NC_005261.1 + 31472 0.77 0.171567
Target:  5'- cGGCCUgagUGGccGCCGGUGCgCGGCGGGc -3'
miRNA:   3'- -CCGGG---ACCuuCGGCUACGgGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 9898 0.74 0.283911
Target:  5'- cGGCCCgcccgGGGcaagcccgccccAGCCGGccUGCCCcGGCGAGc -3'
miRNA:   3'- -CCGGGa----CCU------------UCGGCU--ACGGG-UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 49214 0.73 0.310983
Target:  5'- gGGCg--GGAGGCCGgcGCCCAGCGc- -3'
miRNA:   3'- -CCGggaCCUUCGGCuaCGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 15651 0.71 0.429378
Target:  5'- cGCCCggccGGGAGCUGGUGCuCCAG-GAa -3'
miRNA:   3'- cCGGGa---CCUUCGGCUACG-GGUCgCUc -5'
23736 5' -60.1 NC_005261.1 + 12731 0.71 0.429378
Target:  5'- gGGCCCgccGGcccccuGGgCGG-GCCCGGCGAGg -3'
miRNA:   3'- -CCGGGa--CCu-----UCgGCUaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 129821 0.71 0.412109
Target:  5'- cGCCCUGc--GCCcgGAUGCCCAGCGc- -3'
miRNA:   3'- cCGGGACcuuCGG--CUACGGGUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 30358 0.71 0.403637
Target:  5'- cGGCCCUGaAGGCCGGcgcGCCgGGCGc- -3'
miRNA:   3'- -CCGGGACcUUCGGCUa--CGGgUCGCuc -5'
23736 5' -60.1 NC_005261.1 + 90388 0.72 0.387027
Target:  5'- aGGCCCcgccgGcGggGCUGgcGCCCGGCGcGGa -3'
miRNA:   3'- -CCGGGa----C-CuuCGGCuaCGGGUCGC-UC- -5'
23736 5' -60.1 NC_005261.1 + 40240 0.72 0.382133
Target:  5'- uGGCCC-GGggGCCgugagcgccauggcgGcgGCCgCGGCGGGg -3'
miRNA:   3'- -CCGGGaCCuuCGG---------------CuaCGG-GUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 39392 0.72 0.378893
Target:  5'- cGGCCCUGGcGGCgaccCGAgcCCCAGCGGc -3'
miRNA:   3'- -CCGGGACCuUCG----GCUacGGGUCGCUc -5'
23736 5' -60.1 NC_005261.1 + 90098 0.72 0.370874
Target:  5'- gGGCCCguucgccGGcuGGGCCGAcgcgGCCCgcGGCGAGg -3'
miRNA:   3'- -CCGGGa------CC--UUCGGCUa---CGGG--UCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 132591 0.73 0.332546
Target:  5'- cGCCCgcGGAcGCCcg-GCCCGGCGAGc -3'
miRNA:   3'- cCGGGa-CCUuCGGcuaCGGGUCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 40486 0.73 0.325239
Target:  5'- aGGCCCUGGGAGCgGGcgauggucaUGgCCAGCuucGAGc -3'
miRNA:   3'- -CCGGGACCUUCGgCU---------ACgGGUCG---CUC- -5'
23736 5' -60.1 NC_005261.1 + 88782 0.73 0.318051
Target:  5'- cGGCCCUGGccGCCGgcGCCgcgCAGCaGGa -3'
miRNA:   3'- -CCGGGACCuuCGGCuaCGG---GUCGcUC- -5'
23736 5' -60.1 NC_005261.1 + 77049 0.73 0.318051
Target:  5'- cGGCCCUcGGcgaccgcgccuGGCCGGUGCCgC-GCGAGg -3'
miRNA:   3'- -CCGGGA-CCu----------UCGGCUACGG-GuCGCUC- -5'
23736 5' -60.1 NC_005261.1 + 109248 0.73 0.310983
Target:  5'- cGGCCCagUGcGggGCCacGAaGUCCAGCGAGc -3'
miRNA:   3'- -CCGGG--AC-CuuCGG--CUaCGGGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.