Results 41 - 60 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23736 | 5' | -60.1 | NC_005261.1 | + | 45639 | 0.76 | 0.22443 |
Target: 5'- gGGCCCgcgccGGAGCa-GUGCCCAGCGGGc -3' miRNA: 3'- -CCGGGac---CUUCGgcUACGGGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 16286 | 0.76 | 0.219102 |
Target: 5'- cGCCCggggGGgcGCCGucggGCCCAGCGGc -3' miRNA: 3'- cCGGGa---CCuuCGGCua--CGGGUCGCUc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 74126 | 0.77 | 0.188903 |
Target: 5'- uGGUCCUGGc-GCCGGUGCugguguucgucucCCAGCGGGg -3' miRNA: 3'- -CCGGGACCuuCGGCUACG-------------GGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 72745 | 0.77 | 0.180272 |
Target: 5'- cGGCCCgcaUGGcGGGCCGcAUGCCCAGCa-- -3' miRNA: 3'- -CCGGG---ACC-UUCGGC-UACGGGUCGcuc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 31472 | 0.77 | 0.171567 |
Target: 5'- cGGCCUgagUGGccGCCGGUGCgCGGCGGGc -3' miRNA: 3'- -CCGGG---ACCuuCGGCUACGgGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 9898 | 0.74 | 0.283911 |
Target: 5'- cGGCCCgcccgGGGcaagcccgccccAGCCGGccUGCCCcGGCGAGc -3' miRNA: 3'- -CCGGGa----CCU------------UCGGCU--ACGGG-UCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 49214 | 0.73 | 0.310983 |
Target: 5'- gGGCg--GGAGGCCGgcGCCCAGCGc- -3' miRNA: 3'- -CCGggaCCUUCGGCuaCGGGUCGCuc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 15651 | 0.71 | 0.429378 |
Target: 5'- cGCCCggccGGGAGCUGGUGCuCCAG-GAa -3' miRNA: 3'- cCGGGa---CCUUCGGCUACG-GGUCgCUc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 12731 | 0.71 | 0.429378 |
Target: 5'- gGGCCCgccGGcccccuGGgCGG-GCCCGGCGAGg -3' miRNA: 3'- -CCGGGa--CCu-----UCgGCUaCGGGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 129821 | 0.71 | 0.412109 |
Target: 5'- cGCCCUGc--GCCcgGAUGCCCAGCGc- -3' miRNA: 3'- cCGGGACcuuCGG--CUACGGGUCGCuc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 30358 | 0.71 | 0.403637 |
Target: 5'- cGGCCCUGaAGGCCGGcgcGCCgGGCGc- -3' miRNA: 3'- -CCGGGACcUUCGGCUa--CGGgUCGCuc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 90388 | 0.72 | 0.387027 |
Target: 5'- aGGCCCcgccgGcGggGCUGgcGCCCGGCGcGGa -3' miRNA: 3'- -CCGGGa----C-CuuCGGCuaCGGGUCGC-UC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 40240 | 0.72 | 0.382133 |
Target: 5'- uGGCCC-GGggGCCgugagcgccauggcgGcgGCCgCGGCGGGg -3' miRNA: 3'- -CCGGGaCCuuCGG---------------CuaCGG-GUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 39392 | 0.72 | 0.378893 |
Target: 5'- cGGCCCUGGcGGCgaccCGAgcCCCAGCGGc -3' miRNA: 3'- -CCGGGACCuUCG----GCUacGGGUCGCUc -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 90098 | 0.72 | 0.370874 |
Target: 5'- gGGCCCguucgccGGcuGGGCCGAcgcgGCCCgcGGCGAGg -3' miRNA: 3'- -CCGGGa------CC--UUCGGCUa---CGGG--UCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 132591 | 0.73 | 0.332546 |
Target: 5'- cGCCCgcGGAcGCCcg-GCCCGGCGAGc -3' miRNA: 3'- cCGGGa-CCUuCGGcuaCGGGUCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 40486 | 0.73 | 0.325239 |
Target: 5'- aGGCCCUGGGAGCgGGcgauggucaUGgCCAGCuucGAGc -3' miRNA: 3'- -CCGGGACCUUCGgCU---------ACgGGUCG---CUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 88782 | 0.73 | 0.318051 |
Target: 5'- cGGCCCUGGccGCCGgcGCCgcgCAGCaGGa -3' miRNA: 3'- -CCGGGACCuuCGGCuaCGG---GUCGcUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 77049 | 0.73 | 0.318051 |
Target: 5'- cGGCCCUcGGcgaccgcgccuGGCCGGUGCCgC-GCGAGg -3' miRNA: 3'- -CCGGGA-CCu----------UCGGCUACGG-GuCGCUC- -5' |
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23736 | 5' | -60.1 | NC_005261.1 | + | 109248 | 0.73 | 0.310983 |
Target: 5'- cGGCCCagUGcGggGCCacGAaGUCCAGCGAGc -3' miRNA: 3'- -CCGGG--AC-CuuCGG--CUaCGGGUCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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