miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23737 5' -60.5 NC_005261.1 + 137108 0.66 0.703013
Target:  5'- gAGC-GGAcCCGCGCGGCggcgUUuuGUGGa -3'
miRNA:   3'- -UCGuCCUaGGCGCGCUG----GAggCACCa -5'
23737 5' -60.5 NC_005261.1 + 59584 0.66 0.693189
Target:  5'- cAGCGGGugCCGCGCcgccaccACCUCCGcGGc -3'
miRNA:   3'- -UCGUCCuaGGCGCGc------UGGAGGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 106576 0.66 0.693189
Target:  5'- cGGCcccGGGGccgCCGCGCGGCgCUCCuccUGGa -3'
miRNA:   3'- -UCG---UCCUa--GGCGCGCUG-GAGGc--ACCa -5'
23737 5' -60.5 NC_005261.1 + 4562 0.66 0.683316
Target:  5'- uGGCuGGAUCCGCG-GGCgggUCCGgcgGGg -3'
miRNA:   3'- -UCGuCCUAGGCGCgCUGg--AGGCa--CCa -5'
23737 5' -60.5 NC_005261.1 + 13048 0.66 0.663457
Target:  5'- cGCGGGG-CCGCGCGcGCCccugCCG-GGc -3'
miRNA:   3'- uCGUCCUaGGCGCGC-UGGa---GGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 136905 0.67 0.643501
Target:  5'- uGGCGuGGugugggCCGCGCGGCCgcggcgcaUGUGGUg -3'
miRNA:   3'- -UCGU-CCua----GGCGCGCUGGag------GCACCA- -5'
23737 5' -60.5 NC_005261.1 + 85016 0.67 0.643501
Target:  5'- cGCGGGGU-CGCGCGGCCgCCGc--- -3'
miRNA:   3'- uCGUCCUAgGCGCGCUGGaGGCacca -5'
23737 5' -60.5 NC_005261.1 + 32231 0.67 0.643501
Target:  5'- cGGCGGuGGccuUCUGCGCGGCCgcgCUGcUGGa -3'
miRNA:   3'- -UCGUC-CU---AGGCGCGCUGGa--GGC-ACCa -5'
23737 5' -60.5 NC_005261.1 + 16746 0.67 0.627509
Target:  5'- cGCGGGcgCCGCcaUGACCagccccagcucgucgUCCGUGGg -3'
miRNA:   3'- uCGUCCuaGGCGc-GCUGG---------------AGGCACCa -5'
23737 5' -60.5 NC_005261.1 + 72492 0.67 0.620514
Target:  5'- cGcCAGGAgcgCCGCGCGAagcgggcgccgcauCCUCCuUGGc -3'
miRNA:   3'- uC-GUCCUa--GGCGCGCU--------------GGAGGcACCa -5'
23737 5' -60.5 NC_005261.1 + 19055 0.67 0.603546
Target:  5'- aGGCAGGGguacgggCUGCGCGGCuCUCggcgcgugcuugCGUGGc -3'
miRNA:   3'- -UCGUCCUa------GGCGCGCUG-GAG------------GCACCa -5'
23737 5' -60.5 NC_005261.1 + 93926 0.68 0.593591
Target:  5'- cGCGGGcuugcgccGUCCGCGgGcgccGCCUCCGggcGGUc -3'
miRNA:   3'- uCGUCC--------UAGGCGCgC----UGGAGGCa--CCA- -5'
23737 5' -60.5 NC_005261.1 + 24160 0.68 0.583662
Target:  5'- uGGCGGGAU-CGuCGCaGGCUUCCGgggGGUc -3'
miRNA:   3'- -UCGUCCUAgGC-GCG-CUGGAGGCa--CCA- -5'
23737 5' -60.5 NC_005261.1 + 105251 0.68 0.583662
Target:  5'- cGGCGGcAUCCGCGCGACaggCUCgGcGGg -3'
miRNA:   3'- -UCGUCcUAGGCGCGCUG---GAGgCaCCa -5'
23737 5' -60.5 NC_005261.1 + 100672 0.68 0.582671
Target:  5'- cGCGGGGUUCGCGCGcgagugcACCgcggCCGcGGc -3'
miRNA:   3'- uCGUCCUAGGCGCGC-------UGGa---GGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 137663 0.68 0.573767
Target:  5'- ---cGGcgCCGCGCGACC-CCG-GGg -3'
miRNA:   3'- ucguCCuaGGCGCGCUGGaGGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 68127 0.68 0.573767
Target:  5'- cGCGGG--CCGCggcgcgGCGACCgcgCCGUGGc -3'
miRNA:   3'- uCGUCCuaGGCG------CGCUGGa--GGCACCa -5'
23737 5' -60.5 NC_005261.1 + 2496 0.68 0.563911
Target:  5'- gAGCGGGugGUCCGCgagccgcgccGCGACCUCgG-GGc -3'
miRNA:   3'- -UCGUCC--UAGGCG----------CGCUGGAGgCaCCa -5'
23737 5' -60.5 NC_005261.1 + 15274 0.68 0.560963
Target:  5'- cGGC-GGcgCCGCcggggcgcgcggucGCGGCCUCCG-GGUc -3'
miRNA:   3'- -UCGuCCuaGGCG--------------CGCUGGAGGCaCCA- -5'
23737 5' -60.5 NC_005261.1 + 103220 0.68 0.5541
Target:  5'- uGCAGGAagCGCGCGcaguCCUCCGccGUc -3'
miRNA:   3'- uCGUCCUagGCGCGCu---GGAGGCacCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.