Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23737 | 5' | -60.5 | NC_005261.1 | + | 137703 | 0.79 | 0.135674 |
Target: 5'- cAGCGGGccCCGCGCGACC-CCGgggGGUg -3' miRNA: 3'- -UCGUCCuaGGCGCGCUGGaGGCa--CCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 19 | 0.78 | 0.150023 |
Target: 5'- cAGCGGGccCCGCGCGACC-CCGggggGGUg -3' miRNA: 3'- -UCGUCCuaGGCGCGCUGGaGGCa---CCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 135292 | 0.77 | 0.182917 |
Target: 5'- cGGCGGGuUCCGCGCGACCggCGUGu- -3' miRNA: 3'- -UCGUCCuAGGCGCGCUGGagGCACca -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 43807 | 0.74 | 0.25586 |
Target: 5'- gAGgGGGcgCCggGCGCGcCCUCCGUGGa -3' miRNA: 3'- -UCgUCCuaGG--CGCGCuGGAGGCACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 92318 | 0.74 | 0.268041 |
Target: 5'- cGCGcGGUCCGCGCGGCCcaUCCGcGGg -3' miRNA: 3'- uCGUcCUAGGCGCGCUGG--AGGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 105073 | 0.72 | 0.361789 |
Target: 5'- cGGCAGGGUCCGC-CGACUccgcgccccggaccuUCCGcGGg -3' miRNA: 3'- -UCGUCCUAGGCGcGCUGG---------------AGGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 104099 | 0.72 | 0.358683 |
Target: 5'- cGGCGGcGcUCCGCGCGACCgcagCCGcgcGGUu -3' miRNA: 3'- -UCGUC-CuAGGCGCGCUGGa---GGCa--CCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 133818 | 0.71 | 0.415675 |
Target: 5'- cGGCgacgAGGcgCUGCGCGGCCgcgugcgcgCCGUGGc -3' miRNA: 3'- -UCG----UCCuaGGCGCGCUGGa--------GGCACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 3907 | 0.7 | 0.441741 |
Target: 5'- cGCGGGcgcCCGCGCcgccggcgccGGCCUCCG-GGUa -3' miRNA: 3'- uCGUCCua-GGCGCG----------CUGGAGGCaCCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 44026 | 0.69 | 0.524997 |
Target: 5'- cGGCGGGcggccgCCGCGCGGCggCCGcGGg -3' miRNA: 3'- -UCGUCCua----GGCGCGCUGgaGGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 124251 | 0.69 | 0.50592 |
Target: 5'- gGGCAGGcgCCGCGCGGCg-CCGc--- -3' miRNA: 3'- -UCGUCCuaGGCGCGCUGgaGGCacca -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 36577 | 0.69 | 0.496493 |
Target: 5'- gAGCGGGGgcCCGcCGCGGCCaCCGgggGGg -3' miRNA: 3'- -UCGUCCUa-GGC-GCGCUGGaGGCa--CCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 118931 | 0.69 | 0.496493 |
Target: 5'- gGGCGcGGcgCCGCGCGGCUggCCGcGGc -3' miRNA: 3'- -UCGU-CCuaGGCGCGCUGGa-GGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 24160 | 0.68 | 0.583662 |
Target: 5'- uGGCGGGAU-CGuCGCaGGCUUCCGgggGGUc -3' miRNA: 3'- -UCGUCCUAgGC-GCG-CUGGAGGCa--CCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 100672 | 0.68 | 0.582671 |
Target: 5'- cGCGGGGUUCGCGCGcgagugcACCgcggCCGcGGc -3' miRNA: 3'- uCGUCCUAGGCGCGC-------UGGa---GGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 137663 | 0.68 | 0.573767 |
Target: 5'- ---cGGcgCCGCGCGACC-CCG-GGg -3' miRNA: 3'- ucguCCuaGGCGCGCUGGaGGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 68127 | 0.68 | 0.573767 |
Target: 5'- cGCGGG--CCGCggcgcgGCGACCgcgCCGUGGc -3' miRNA: 3'- uCGUCCuaGGCG------CGCUGGa--GGCACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 2496 | 0.68 | 0.563911 |
Target: 5'- gAGCGGGugGUCCGCgagccgcgccGCGACCUCgG-GGc -3' miRNA: 3'- -UCGUCC--UAGGCG----------CGCUGGAGgCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 15274 | 0.68 | 0.560963 |
Target: 5'- cGGC-GGcgCCGCcggggcgcgcggucGCGGCCUCCG-GGUc -3' miRNA: 3'- -UCGuCCuaGGCG--------------CGCUGGAGGCaCCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 105251 | 0.68 | 0.583662 |
Target: 5'- cGGCGGcAUCCGCGCGACaggCUCgGcGGg -3' miRNA: 3'- -UCGUCcUAGGCGCGCUG---GAGgCaCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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