Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23737 | 5' | -60.5 | NC_005261.1 | + | 137108 | 0.66 | 0.703013 |
Target: 5'- gAGC-GGAcCCGCGCGGCggcgUUuuGUGGa -3' miRNA: 3'- -UCGuCCUaGGCGCGCUG----GAggCACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 59584 | 0.66 | 0.693189 |
Target: 5'- cAGCGGGugCCGCGCcgccaccACCUCCGcGGc -3' miRNA: 3'- -UCGUCCuaGGCGCGc------UGGAGGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 106576 | 0.66 | 0.693189 |
Target: 5'- cGGCcccGGGGccgCCGCGCGGCgCUCCuccUGGa -3' miRNA: 3'- -UCG---UCCUa--GGCGCGCUG-GAGGc--ACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 4562 | 0.66 | 0.683316 |
Target: 5'- uGGCuGGAUCCGCG-GGCgggUCCGgcgGGg -3' miRNA: 3'- -UCGuCCUAGGCGCgCUGg--AGGCa--CCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 13048 | 0.66 | 0.663457 |
Target: 5'- cGCGGGG-CCGCGCGcGCCccugCCG-GGc -3' miRNA: 3'- uCGUCCUaGGCGCGC-UGGa---GGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 136905 | 0.67 | 0.643501 |
Target: 5'- uGGCGuGGugugggCCGCGCGGCCgcggcgcaUGUGGUg -3' miRNA: 3'- -UCGU-CCua----GGCGCGCUGGag------GCACCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 85016 | 0.67 | 0.643501 |
Target: 5'- cGCGGGGU-CGCGCGGCCgCCGc--- -3' miRNA: 3'- uCGUCCUAgGCGCGCUGGaGGCacca -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 32231 | 0.67 | 0.643501 |
Target: 5'- cGGCGGuGGccuUCUGCGCGGCCgcgCUGcUGGa -3' miRNA: 3'- -UCGUC-CU---AGGCGCGCUGGa--GGC-ACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 16746 | 0.67 | 0.627509 |
Target: 5'- cGCGGGcgCCGCcaUGACCagccccagcucgucgUCCGUGGg -3' miRNA: 3'- uCGUCCuaGGCGc-GCUGG---------------AGGCACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 72492 | 0.67 | 0.620514 |
Target: 5'- cGcCAGGAgcgCCGCGCGAagcgggcgccgcauCCUCCuUGGc -3' miRNA: 3'- uC-GUCCUa--GGCGCGCU--------------GGAGGcACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 19055 | 0.67 | 0.603546 |
Target: 5'- aGGCAGGGguacgggCUGCGCGGCuCUCggcgcgugcuugCGUGGc -3' miRNA: 3'- -UCGUCCUa------GGCGCGCUG-GAG------------GCACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 93926 | 0.68 | 0.593591 |
Target: 5'- cGCGGGcuugcgccGUCCGCGgGcgccGCCUCCGggcGGUc -3' miRNA: 3'- uCGUCC--------UAGGCGCgC----UGGAGGCa--CCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 24160 | 0.68 | 0.583662 |
Target: 5'- uGGCGGGAU-CGuCGCaGGCUUCCGgggGGUc -3' miRNA: 3'- -UCGUCCUAgGC-GCG-CUGGAGGCa--CCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 105251 | 0.68 | 0.583662 |
Target: 5'- cGGCGGcAUCCGCGCGACaggCUCgGcGGg -3' miRNA: 3'- -UCGUCcUAGGCGCGCUG---GAGgCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 100672 | 0.68 | 0.582671 |
Target: 5'- cGCGGGGUUCGCGCGcgagugcACCgcggCCGcGGc -3' miRNA: 3'- uCGUCCUAGGCGCGC-------UGGa---GGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 137663 | 0.68 | 0.573767 |
Target: 5'- ---cGGcgCCGCGCGACC-CCG-GGg -3' miRNA: 3'- ucguCCuaGGCGCGCUGGaGGCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 68127 | 0.68 | 0.573767 |
Target: 5'- cGCGGG--CCGCggcgcgGCGACCgcgCCGUGGc -3' miRNA: 3'- uCGUCCuaGGCG------CGCUGGa--GGCACCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 2496 | 0.68 | 0.563911 |
Target: 5'- gAGCGGGugGUCCGCgagccgcgccGCGACCUCgG-GGc -3' miRNA: 3'- -UCGUCC--UAGGCG----------CGCUGGAGgCaCCa -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 15274 | 0.68 | 0.560963 |
Target: 5'- cGGC-GGcgCCGCcggggcgcgcggucGCGGCCUCCG-GGUc -3' miRNA: 3'- -UCGuCCuaGGCG--------------CGCUGGAGGCaCCA- -5' |
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23737 | 5' | -60.5 | NC_005261.1 | + | 103220 | 0.68 | 0.5541 |
Target: 5'- uGCAGGAagCGCGCGcaguCCUCCGccGUc -3' miRNA: 3'- uCGUCCUagGCGCGCu---GGAGGCacCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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