miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23737 5' -60.5 NC_005261.1 + 44026 0.69 0.524997
Target:  5'- cGGCGGGcggccgCCGCGCGGCggCCGcGGg -3'
miRNA:   3'- -UCGUCCua----GGCGCGCUGgaGGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 124251 0.69 0.50592
Target:  5'- gGGCAGGcgCCGCGCGGCg-CCGc--- -3'
miRNA:   3'- -UCGUCCuaGGCGCGCUGgaGGCacca -5'
23737 5' -60.5 NC_005261.1 + 36577 0.69 0.496493
Target:  5'- gAGCGGGGgcCCGcCGCGGCCaCCGgggGGg -3'
miRNA:   3'- -UCGUCCUa-GGC-GCGCUGGaGGCa--CCa -5'
23737 5' -60.5 NC_005261.1 + 118931 0.69 0.496493
Target:  5'- gGGCGcGGcgCCGCGCGGCUggCCGcGGc -3'
miRNA:   3'- -UCGU-CCuaGGCGCGCUGGa-GGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 3907 0.7 0.441741
Target:  5'- cGCGGGcgcCCGCGCcgccggcgccGGCCUCCG-GGUa -3'
miRNA:   3'- uCGUCCua-GGCGCG----------CUGGAGGCaCCA- -5'
23737 5' -60.5 NC_005261.1 + 133818 0.71 0.415675
Target:  5'- cGGCgacgAGGcgCUGCGCGGCCgcgugcgcgCCGUGGc -3'
miRNA:   3'- -UCG----UCCuaGGCGCGCUGGa--------GGCACCa -5'
23737 5' -60.5 NC_005261.1 + 105073 0.72 0.361789
Target:  5'- cGGCAGGGUCCGC-CGACUccgcgccccggaccuUCCGcGGg -3'
miRNA:   3'- -UCGUCCUAGGCGcGCUGG---------------AGGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 104099 0.72 0.358683
Target:  5'- cGGCGGcGcUCCGCGCGACCgcagCCGcgcGGUu -3'
miRNA:   3'- -UCGUC-CuAGGCGCGCUGGa---GGCa--CCA- -5'
23737 5' -60.5 NC_005261.1 + 92318 0.74 0.268041
Target:  5'- cGCGcGGUCCGCGCGGCCcaUCCGcGGg -3'
miRNA:   3'- uCGUcCUAGGCGCGCUGG--AGGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 43807 0.74 0.25586
Target:  5'- gAGgGGGcgCCggGCGCGcCCUCCGUGGa -3'
miRNA:   3'- -UCgUCCuaGG--CGCGCuGGAGGCACCa -5'
23737 5' -60.5 NC_005261.1 + 135292 0.77 0.182917
Target:  5'- cGGCGGGuUCCGCGCGACCggCGUGu- -3'
miRNA:   3'- -UCGUCCuAGGCGCGCUGGagGCACca -5'
23737 5' -60.5 NC_005261.1 + 19 0.78 0.150023
Target:  5'- cAGCGGGccCCGCGCGACC-CCGggggGGUg -3'
miRNA:   3'- -UCGUCCuaGGCGCGCUGGaGGCa---CCA- -5'
23737 5' -60.5 NC_005261.1 + 137703 0.79 0.135674
Target:  5'- cAGCGGGccCCGCGCGACC-CCGgggGGUg -3'
miRNA:   3'- -UCGUCCuaGGCGCGCUGGaGGCa--CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.