miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23737 5' -60.5 NC_005261.1 + 103220 0.68 0.5541
Target:  5'- uGCAGGAagCGCGCGcaguCCUCCGccGUc -3'
miRNA:   3'- uCGUCCUagGCGCGCu---GGAGGCacCA- -5'
23737 5' -60.5 NC_005261.1 + 104099 0.72 0.358683
Target:  5'- cGGCGGcGcUCCGCGCGACCgcagCCGcgcGGUu -3'
miRNA:   3'- -UCGUC-CuAGGCGCGCUGGa---GGCa--CCA- -5'
23737 5' -60.5 NC_005261.1 + 105073 0.72 0.361789
Target:  5'- cGGCAGGGUCCGC-CGACUccgcgccccggaccuUCCGcGGg -3'
miRNA:   3'- -UCGUCCUAGGCGcGCUGG---------------AGGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 105251 0.68 0.583662
Target:  5'- cGGCGGcAUCCGCGCGACaggCUCgGcGGg -3'
miRNA:   3'- -UCGUCcUAGGCGCGCUG---GAGgCaCCa -5'
23737 5' -60.5 NC_005261.1 + 106576 0.66 0.693189
Target:  5'- cGGCcccGGGGccgCCGCGCGGCgCUCCuccUGGa -3'
miRNA:   3'- -UCG---UCCUa--GGCGCGCUG-GAGGc--ACCa -5'
23737 5' -60.5 NC_005261.1 + 118931 0.69 0.496493
Target:  5'- gGGCGcGGcgCCGCGCGGCUggCCGcGGc -3'
miRNA:   3'- -UCGU-CCuaGGCGCGCUGGa-GGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 124251 0.69 0.50592
Target:  5'- gGGCAGGcgCCGCGCGGCg-CCGc--- -3'
miRNA:   3'- -UCGUCCuaGGCGCGCUGgaGGCacca -5'
23737 5' -60.5 NC_005261.1 + 133818 0.71 0.415675
Target:  5'- cGGCgacgAGGcgCUGCGCGGCCgcgugcgcgCCGUGGc -3'
miRNA:   3'- -UCG----UCCuaGGCGCGCUGGa--------GGCACCa -5'
23737 5' -60.5 NC_005261.1 + 135292 0.77 0.182917
Target:  5'- cGGCGGGuUCCGCGCGACCggCGUGu- -3'
miRNA:   3'- -UCGUCCuAGGCGCGCUGGagGCACca -5'
23737 5' -60.5 NC_005261.1 + 136905 0.67 0.643501
Target:  5'- uGGCGuGGugugggCCGCGCGGCCgcggcgcaUGUGGUg -3'
miRNA:   3'- -UCGU-CCua----GGCGCGCUGGag------GCACCA- -5'
23737 5' -60.5 NC_005261.1 + 137108 0.66 0.703013
Target:  5'- gAGC-GGAcCCGCGCGGCggcgUUuuGUGGa -3'
miRNA:   3'- -UCGuCCUaGGCGCGCUG----GAggCACCa -5'
23737 5' -60.5 NC_005261.1 + 137663 0.68 0.573767
Target:  5'- ---cGGcgCCGCGCGACC-CCG-GGg -3'
miRNA:   3'- ucguCCuaGGCGCGCUGGaGGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 137703 0.79 0.135674
Target:  5'- cAGCGGGccCCGCGCGACC-CCGgggGGUg -3'
miRNA:   3'- -UCGUCCuaGGCGCGCUGGaGGCa--CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.