miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23737 5' -60.5 NC_005261.1 + 44026 0.69 0.524997
Target:  5'- cGGCGGGcggccgCCGCGCGGCggCCGcGGg -3'
miRNA:   3'- -UCGUCCua----GGCGCGCUGgaGGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 43807 0.74 0.25586
Target:  5'- gAGgGGGcgCCggGCGCGcCCUCCGUGGa -3'
miRNA:   3'- -UCgUCCuaGG--CGCGCuGGAGGCACCa -5'
23737 5' -60.5 NC_005261.1 + 36577 0.69 0.496493
Target:  5'- gAGCGGGGgcCCGcCGCGGCCaCCGgggGGg -3'
miRNA:   3'- -UCGUCCUa-GGC-GCGCUGGaGGCa--CCa -5'
23737 5' -60.5 NC_005261.1 + 32231 0.67 0.643501
Target:  5'- cGGCGGuGGccuUCUGCGCGGCCgcgCUGcUGGa -3'
miRNA:   3'- -UCGUC-CU---AGGCGCGCUGGa--GGC-ACCa -5'
23737 5' -60.5 NC_005261.1 + 24160 0.68 0.583662
Target:  5'- uGGCGGGAU-CGuCGCaGGCUUCCGgggGGUc -3'
miRNA:   3'- -UCGUCCUAgGC-GCG-CUGGAGGCa--CCA- -5'
23737 5' -60.5 NC_005261.1 + 19055 0.67 0.603546
Target:  5'- aGGCAGGGguacgggCUGCGCGGCuCUCggcgcgugcuugCGUGGc -3'
miRNA:   3'- -UCGUCCUa------GGCGCGCUG-GAG------------GCACCa -5'
23737 5' -60.5 NC_005261.1 + 16746 0.67 0.627509
Target:  5'- cGCGGGcgCCGCcaUGACCagccccagcucgucgUCCGUGGg -3'
miRNA:   3'- uCGUCCuaGGCGc-GCUGG---------------AGGCACCa -5'
23737 5' -60.5 NC_005261.1 + 15274 0.68 0.560963
Target:  5'- cGGC-GGcgCCGCcggggcgcgcggucGCGGCCUCCG-GGUc -3'
miRNA:   3'- -UCGuCCuaGGCG--------------CGCUGGAGGCaCCA- -5'
23737 5' -60.5 NC_005261.1 + 13048 0.66 0.663457
Target:  5'- cGCGGGG-CCGCGCGcGCCccugCCG-GGc -3'
miRNA:   3'- uCGUCCUaGGCGCGC-UGGa---GGCaCCa -5'
23737 5' -60.5 NC_005261.1 + 4562 0.66 0.683316
Target:  5'- uGGCuGGAUCCGCG-GGCgggUCCGgcgGGg -3'
miRNA:   3'- -UCGuCCUAGGCGCgCUGg--AGGCa--CCa -5'
23737 5' -60.5 NC_005261.1 + 3907 0.7 0.441741
Target:  5'- cGCGGGcgcCCGCGCcgccggcgccGGCCUCCG-GGUa -3'
miRNA:   3'- uCGUCCua-GGCGCG----------CUGGAGGCaCCA- -5'
23737 5' -60.5 NC_005261.1 + 2496 0.68 0.563911
Target:  5'- gAGCGGGugGUCCGCgagccgcgccGCGACCUCgG-GGc -3'
miRNA:   3'- -UCGUCC--UAGGCG----------CGCUGGAGgCaCCa -5'
23737 5' -60.5 NC_005261.1 + 19 0.78 0.150023
Target:  5'- cAGCGGGccCCGCGCGACC-CCGggggGGUg -3'
miRNA:   3'- -UCGUCCuaGGCGCGCUGGaGGCa---CCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.