miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 100247 0.65 0.904358
Target:  5'- cGCACGuCUgccagcccccagucGGCgcGCCGGU--GGCGCa -3'
miRNA:   3'- cCGUGCuGA--------------UCGa-CGGCCAugUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 109151 0.66 0.900555
Target:  5'- aGGCGCcAC-AGCaccagGCCGGgcagguucuccgcuaGCAGCGCc -3'
miRNA:   3'- -CCGUGcUGaUCGa----CGGCCa--------------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 54232 0.66 0.899913
Target:  5'- aGGUcacGCGGCgcGC-GCUcauGUGCAGCGCg -3'
miRNA:   3'- -CCG---UGCUGauCGaCGGc--CAUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 32012 0.66 0.899913
Target:  5'- cGCGCGAgUAccggcagcgcguGCUGCCGcGgcucgACgGGCGCa -3'
miRNA:   3'- cCGUGCUgAU------------CGACGGC-Ca----UG-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 69537 0.66 0.899913
Target:  5'- gGGCGCuGGCgcGCgcGCUGGggACGGCGg -3'
miRNA:   3'- -CCGUG-CUGauCGa-CGGCCa-UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 31906 0.66 0.899913
Target:  5'- cGCGCGGCUcuaccccggGGCgccgccGCUGGgcucugccGCGGCGCc -3'
miRNA:   3'- cCGUGCUGA---------UCGa-----CGGCCa-------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 83570 0.66 0.899913
Target:  5'- gGGCgugcccGCGGCgcccGCgGCCGccaGCAGCGCg -3'
miRNA:   3'- -CCG------UGCUGau--CGaCGGCca-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 35014 0.66 0.899913
Target:  5'- cGGUGCGGCcGGCgucUCGGUcGCuGGCGCg -3'
miRNA:   3'- -CCGUGCUGaUCGac-GGCCA-UG-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 3900 0.66 0.899913
Target:  5'- aGCGCGGCgcgGGCgcccgcGCCGc--CGGCGCc -3'
miRNA:   3'- cCGUGCUGa--UCGa-----CGGCcauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 87410 0.66 0.899913
Target:  5'- cGGCGCcgucGACgGGCgcGCCGGcgaaGGCGCc -3'
miRNA:   3'- -CCGUG----CUGaUCGa-CGGCCaug-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 92327 0.66 0.899913
Target:  5'- cGCGCGGCccauccgcgGGCcaCCGGUcACGGUGCa -3'
miRNA:   3'- cCGUGCUGa--------UCGacGGCCA-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 94868 0.66 0.899913
Target:  5'- cGCACGGCccgGGCgggcgGcCCGcGUGCAGC-Ca -3'
miRNA:   3'- cCGUGCUGa--UCGa----C-GGC-CAUGUCGcG- -5'
23738 3' -56.1 NC_005261.1 + 130559 0.66 0.899913
Target:  5'- uGCugGGC-GGCccGCCGGgcggaAGCGCc -3'
miRNA:   3'- cCGugCUGaUCGa-CGGCCaug--UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 28836 0.66 0.897973
Target:  5'- cGGcCGCGGCUgaggcggccgucguGGCcGCCgcccuugaGGcUGCGGCGCg -3'
miRNA:   3'- -CC-GUGCUGA--------------UCGaCGG--------CC-AUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 57321 0.66 0.893364
Target:  5'- -cCAUGACUcgcAGCUGCCaGc-CGGCGCc -3'
miRNA:   3'- ccGUGCUGA---UCGACGGcCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 132159 0.66 0.893364
Target:  5'- aGCGCGcCgccGCUGCag--GCAGCGCg -3'
miRNA:   3'- cCGUGCuGau-CGACGgccaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 121124 0.66 0.893364
Target:  5'- gGGCGCGGa-GGC-GCgGGcGCgAGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCGaCGgCCaUG-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 51007 0.66 0.893364
Target:  5'- gGGCGCGGCgggAGCUcggcgagcGCCacc-CGGCGCu -3'
miRNA:   3'- -CCGUGCUGa--UCGA--------CGGccauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 39775 0.66 0.893364
Target:  5'- uGGCcuCGAggAcGUcGCCGGgggGCGGCGCg -3'
miRNA:   3'- -CCGu-GCUgaU-CGaCGGCCa--UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 81349 0.66 0.893364
Target:  5'- cGGCGgGGCgggGGCUugcggggggcGCCGGgcucgcugGgGGCGCc -3'
miRNA:   3'- -CCGUgCUGa--UCGA----------CGGCCa-------UgUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.