miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 100247 0.65 0.904358
Target:  5'- cGCACGuCUgccagcccccagucGGCgcGCCGGU--GGCGCa -3'
miRNA:   3'- cCGUGCuGA--------------UCGa-CGGCCAugUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 133364 0.66 0.872352
Target:  5'- cGCAgGGCUucGGCUGCC--UGC-GCGCg -3'
miRNA:   3'- cCGUgCUGA--UCGACGGccAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 104545 0.66 0.879579
Target:  5'- aGGCGCaGCuUGGCguccGCCaGGUcgccCAGCGCu -3'
miRNA:   3'- -CCGUGcUG-AUCGa---CGG-CCAu---GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 106566 0.66 0.872352
Target:  5'- cGGCGCGcGCcGGCcccgggGCCGccgcGCGGCGCu -3'
miRNA:   3'- -CCGUGC-UGaUCGa-----CGGCca--UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 26106 0.66 0.879579
Target:  5'- aGGCA-GAUccAGCgGCCGGguaaGCAGgCGCg -3'
miRNA:   3'- -CCGUgCUGa-UCGaCGGCCa---UGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 106034 0.66 0.872352
Target:  5'- aGGCACGccacCgcGCUGCCcGGcccUAGCGCc -3'
miRNA:   3'- -CCGUGCu---GauCGACGG-CCau-GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 1890 0.66 0.872352
Target:  5'- cGGCGCGcGCcAGCgcgcGCCGcucaGgcCAGCGCg -3'
miRNA:   3'- -CCGUGC-UGaUCGa---CGGC----CauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 133832 0.66 0.872352
Target:  5'- uGCGCGGCcgcguGCgcGCCGuGgcCGGCGCg -3'
miRNA:   3'- cCGUGCUGau---CGa-CGGC-CauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 36966 0.66 0.870141
Target:  5'- cGCGCGGCgcagAGCUcggugcgggcuccaGCCGGagcccgcggGCuGCGCg -3'
miRNA:   3'- cCGUGCUGa---UCGA--------------CGGCCa--------UGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 34352 0.66 0.872352
Target:  5'- cGGC-CGACggg--GCCGGgcgccgcGCGGCGCc -3'
miRNA:   3'- -CCGuGCUGaucgaCGGCCa------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 49596 0.66 0.872352
Target:  5'- cGCGCGGCgcuGCUGUCaaaGUACA-CGCa -3'
miRNA:   3'- cCGUGCUGau-CGACGGc--CAUGUcGCG- -5'
23738 3' -56.1 NC_005261.1 + 41140 0.66 0.878866
Target:  5'- uGGCGCGcGCcAGCcGCCGGUaggcuucguccacGCGGCcCg -3'
miRNA:   3'- -CCGUGC-UGaUCGaCGGCCA-------------UGUCGcG- -5'
23738 3' -56.1 NC_005261.1 + 65533 0.66 0.872352
Target:  5'- aGCGCGGCc-GC-GCgGGcaGCAGCGCg -3'
miRNA:   3'- cCGUGCUGauCGaCGgCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 137064 0.66 0.872352
Target:  5'- aGGCGCGGa-GGC-GCgGGcacccaugGCGGCGCa -3'
miRNA:   3'- -CCGUGCUgaUCGaCGgCCa-------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 123188 0.66 0.872352
Target:  5'- uGGCugGugUgggcggacccAGCcGCCGcGUA-AGCGCg -3'
miRNA:   3'- -CCGugCugA----------UCGaCGGC-CAUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118672 0.66 0.872352
Target:  5'- gGGCugaggGCGGCgGGC-GCUGGcGCAcGCGCg -3'
miRNA:   3'- -CCG-----UGCUGaUCGaCGGCCaUGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 53982 0.66 0.879579
Target:  5'- aGCGCGGCgAGCU-CCaGcgcGCGGCGCa -3'
miRNA:   3'- cCGUGCUGaUCGAcGGcCa--UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 52696 0.66 0.870141
Target:  5'- gGGCGCGcc--GCUGCCGGccgaUgaaagugacgagauGCGGCGCc -3'
miRNA:   3'- -CCGUGCugauCGACGGCC----A--------------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 96148 0.66 0.872352
Target:  5'- cGGCACGAgaAG--GCCGucGUGCcGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCgaCGGC--CAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 14843 0.66 0.872352
Target:  5'- aGCACGGC-AGCaGgCGG--CGGCGCa -3'
miRNA:   3'- cCGUGCUGaUCGaCgGCCauGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.