miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 86496 0.66 0.886585
Target:  5'- cGGCgccugucuGCGGCaggGGCuUGCCGuccuuGUcGCAGCGCg -3'
miRNA:   3'- -CCG--------UGCUGa--UCG-ACGGC-----CA-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 123884 0.66 0.879579
Target:  5'- uGGCGCGcACUucgcggaaGGCcGCCGcuGUGgGGUGCg -3'
miRNA:   3'- -CCGUGC-UGA--------UCGaCGGC--CAUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 133364 0.66 0.872352
Target:  5'- cGCAgGGCUucGGCUGCC--UGC-GCGCg -3'
miRNA:   3'- cCGUgCUGA--UCGACGGccAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 26106 0.66 0.879579
Target:  5'- aGGCA-GAUccAGCgGCCGGguaaGCAGgCGCg -3'
miRNA:   3'- -CCGUgCUGa-UCGaCGGCCa---UGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 138130 0.66 0.879579
Target:  5'- gGGcCGCGAC-GGCcgGCgGG-AUGGCGCg -3'
miRNA:   3'- -CC-GUGCUGaUCGa-CGgCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 96148 0.66 0.872352
Target:  5'- cGGCACGAgaAG--GCCGucGUGCcGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCgaCGGC--CAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 74475 0.66 0.872352
Target:  5'- cGGCGCGGCguGCcuggGCgGGaucuCGGCGCu -3'
miRNA:   3'- -CCGUGCUGauCGa---CGgCCau--GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 68699 0.66 0.879579
Target:  5'- cGGCGCgGACgacGGCggcGCCGGcccucacGCGGCGg -3'
miRNA:   3'- -CCGUG-CUGa--UCGa--CGGCCa------UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 104545 0.66 0.879579
Target:  5'- aGGCGCaGCuUGGCguccGCCaGGUcgccCAGCGCu -3'
miRNA:   3'- -CCGUGcUG-AUCGa---CGG-CCAu---GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 63925 0.66 0.879579
Target:  5'- cGCACGACcgugAGCccgaaGCCcgGGUGCAGCc- -3'
miRNA:   3'- cCGUGCUGa---UCGa----CGG--CCAUGUCGcg -5'
23738 3' -56.1 NC_005261.1 + 92186 0.66 0.879579
Target:  5'- gGGCcCGACgccGCcGCUGGcGCAGcCGCc -3'
miRNA:   3'- -CCGuGCUGau-CGaCGGCCaUGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 14973 0.66 0.879579
Target:  5'- uGGgGCGACUGcGCgGCCGcGccgGCcGCGCc -3'
miRNA:   3'- -CCgUGCUGAU-CGaCGGC-Ca--UGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 14843 0.66 0.872352
Target:  5'- aGCACGGC-AGCaGgCGG--CGGCGCa -3'
miRNA:   3'- cCGUGCUGaUCGaCgGCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 52696 0.66 0.870141
Target:  5'- gGGCGCGcc--GCUGCCGGccgaUgaaagugacgagauGCGGCGCc -3'
miRNA:   3'- -CCGUGCugauCGACGGCC----A--------------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 459 0.66 0.879579
Target:  5'- gGGcCGCGAC-GGCcgGCgGG-AUGGCGCg -3'
miRNA:   3'- -CC-GUGCUGaUCGa-CGgCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 22698 0.66 0.879579
Target:  5'- gGGCccgGCGACgaggccgucgAGgaGCCGGaggacCAGCGCc -3'
miRNA:   3'- -CCG---UGCUGa---------UCgaCGGCCau---GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 34922 0.66 0.879579
Target:  5'- gGGCGCGGCcacGCggggGgCGGc-CGGCGCg -3'
miRNA:   3'- -CCGUGCUGau-CGa---CgGCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 125020 0.66 0.879579
Target:  5'- uGCGCuccaGCaGGCU-CCGGUGgGGCGCu -3'
miRNA:   3'- cCGUGc---UGaUCGAcGGCCAUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 77806 0.66 0.886585
Target:  5'- gGGCGCGcccGCcgAGCUGCCGcccCAGCa- -3'
miRNA:   3'- -CCGUGC---UGa-UCGACGGCcauGUCGcg -5'
23738 3' -56.1 NC_005261.1 + 107567 0.66 0.883809
Target:  5'- cGGCAgCGGCgaaguagGGCgcgaagGCCGGgucccgcaggacgGCAGCGg -3'
miRNA:   3'- -CCGU-GCUGa------UCGa-----CGGCCa------------UGUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.