miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 77806 0.66 0.886585
Target:  5'- gGGCGCGcccGCcgAGCUGCCGcccCAGCa- -3'
miRNA:   3'- -CCGUGC---UGa-UCGACGGCcauGUCGcg -5'
23738 3' -56.1 NC_005261.1 + 106034 0.66 0.872352
Target:  5'- aGGCACGccacCgcGCUGCCcGGcccUAGCGCc -3'
miRNA:   3'- -CCGUGCu---GauCGACGG-CCau-GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 123884 0.66 0.879579
Target:  5'- uGGCGCGcACUucgcggaaGGCcGCCGcuGUGgGGUGCg -3'
miRNA:   3'- -CCGUGC-UGA--------UCGaCGGC--CAUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 14973 0.66 0.879579
Target:  5'- uGGgGCGACUGcGCgGCCGcGccgGCcGCGCc -3'
miRNA:   3'- -CCgUGCUGAU-CGaCGGC-Ca--UGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 21189 0.66 0.882408
Target:  5'- uGGCGCGagcgcggccgcggacGCUGGCcccgGCCGcG-ACGGCGg -3'
miRNA:   3'- -CCGUGC---------------UGAUCGa---CGGC-CaUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 96148 0.66 0.872352
Target:  5'- cGGCACGAgaAG--GCCGucGUGCcGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCgaCGGC--CAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 74475 0.66 0.872352
Target:  5'- cGGCGCGGCguGCcuggGCgGGaucuCGGCGCu -3'
miRNA:   3'- -CCGUGCUGauCGa---CGgCCau--GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 3601 0.66 0.892696
Target:  5'- gGGcCGCGccaagcaGCUcAGCUGcCCGGaGCAcGCGCu -3'
miRNA:   3'- -CC-GUGC-------UGA-UCGAC-GGCCaUGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 51007 0.66 0.893364
Target:  5'- gGGCGCGGCgggAGCUcggcgagcGCCacc-CGGCGCu -3'
miRNA:   3'- -CCGUGCUGa--UCGA--------CGGccauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 91724 0.66 0.892696
Target:  5'- cGGCucgccGCGGCgGGCUucgcggcgcucacGCCGG--CGGCGCa -3'
miRNA:   3'- -CCG-----UGCUGaUCGA-------------CGGCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 133364 0.66 0.872352
Target:  5'- cGCAgGGCUucGGCUGCC--UGC-GCGCg -3'
miRNA:   3'- cCGUgCUGA--UCGACGGccAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 52696 0.66 0.870141
Target:  5'- gGGCGCGcc--GCUGCCGGccgaUgaaagugacgagauGCGGCGCc -3'
miRNA:   3'- -CCGUGCugauCGACGGCC----A--------------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 57321 0.66 0.893364
Target:  5'- -cCAUGACUcgcAGCUGCCaGc-CGGCGCc -3'
miRNA:   3'- ccGUGCUGA---UCGACGGcCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 1890 0.66 0.872352
Target:  5'- cGGCGCGcGCcAGCgcgcGCCGcucaGgcCAGCGCg -3'
miRNA:   3'- -CCGUGC-UGaUCGa---CGGC----CauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 2589 0.66 0.879579
Target:  5'- cGGCACGcgGCggaAGCcGCCGucgGCGGCGg -3'
miRNA:   3'- -CCGUGC--UGa--UCGaCGGCca-UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 33807 0.66 0.879579
Target:  5'- cGGCG-GGCUugucuuugGGCgGCCGGgg-GGCGCg -3'
miRNA:   3'- -CCGUgCUGA--------UCGaCGGCCaugUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118672 0.66 0.872352
Target:  5'- gGGCugaggGCGGCgGGC-GCUGGcGCAcGCGCg -3'
miRNA:   3'- -CCG-----UGCUGaUCGaCGGCCaUGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 87889 0.66 0.886585
Target:  5'- aGGCGCGGagagGGCggGCCGGgcgUACcGUGUg -3'
miRNA:   3'- -CCGUGCUga--UCGa-CGGCC---AUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 15490 0.66 0.893364
Target:  5'- cGCGCcGCUcGCUGCgGGcGgGGCGUg -3'
miRNA:   3'- cCGUGcUGAuCGACGgCCaUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 137064 0.66 0.872352
Target:  5'- aGGCGCGGa-GGC-GCgGGcacccaugGCGGCGCa -3'
miRNA:   3'- -CCGUGCUgaUCGaCGgCCa-------UGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.