miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 133364 0.66 0.872352
Target:  5'- cGCAgGGCUucGGCUGCC--UGC-GCGCg -3'
miRNA:   3'- cCGUgCUGA--UCGACGGccAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 28836 0.66 0.897973
Target:  5'- cGGcCGCGGCUgaggcggccgucguGGCcGCCgcccuugaGGcUGCGGCGCg -3'
miRNA:   3'- -CC-GUGCUGA--------------UCGaCGG--------CC-AUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 104545 0.66 0.879579
Target:  5'- aGGCGCaGCuUGGCguccGCCaGGUcgccCAGCGCu -3'
miRNA:   3'- -CCGUGcUG-AUCGa---CGG-CCAu---GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 77806 0.66 0.886585
Target:  5'- gGGCGCGcccGCcgAGCUGCCGcccCAGCa- -3'
miRNA:   3'- -CCGUGC---UGa-UCGACGGCcauGUCGcg -5'
23738 3' -56.1 NC_005261.1 + 52696 0.66 0.870141
Target:  5'- gGGCGCGcc--GCUGCCGGccgaUgaaagugacgagauGCGGCGCc -3'
miRNA:   3'- -CCGUGCugauCGACGGCC----A--------------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 90228 0.66 0.893364
Target:  5'- cGCGCGGCgggcgGGCgcGCCgucgGGUAUcagGGCGCc -3'
miRNA:   3'- cCGUGCUGa----UCGa-CGG----CCAUG---UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 26106 0.66 0.879579
Target:  5'- aGGCA-GAUccAGCgGCCGGguaaGCAGgCGCg -3'
miRNA:   3'- -CCGUgCUGa-UCGaCGGCCa---UGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 21189 0.66 0.882408
Target:  5'- uGGCGCGagcgcggccgcggacGCUGGCcccgGCCGcG-ACGGCGg -3'
miRNA:   3'- -CCGUGC---------------UGAUCGa---CGGC-CaUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 34922 0.66 0.879579
Target:  5'- gGGCGCGGCcacGCggggGgCGGc-CGGCGCg -3'
miRNA:   3'- -CCGUGCUGau-CGa---CgGCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 121124 0.66 0.893364
Target:  5'- gGGCGCGGa-GGC-GCgGGcGCgAGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCGaCGgCCaUG-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 71489 0.66 0.886585
Target:  5'- uGCGCGGCg----GCCaGGUGC-GCGCg -3'
miRNA:   3'- cCGUGCUGaucgaCGG-CCAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 57321 0.66 0.893364
Target:  5'- -cCAUGACUcgcAGCUGCCaGc-CGGCGCc -3'
miRNA:   3'- ccGUGCUGA---UCGACGGcCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 20509 0.66 0.893364
Target:  5'- gGGC-CGGCUAGggacGCCGGUcguugucuccgACcGCGCu -3'
miRNA:   3'- -CCGuGCUGAUCga--CGGCCA-----------UGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 93914 0.66 0.886585
Target:  5'- gGGCGCGGCgcccgcgGGCUugcGCCGuccGCGgGCGCc -3'
miRNA:   3'- -CCGUGCUGa------UCGA---CGGCca-UGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 39775 0.66 0.893364
Target:  5'- uGGCcuCGAggAcGUcGCCGGgggGCGGCGCg -3'
miRNA:   3'- -CCGu-GCUgaU-CGaCGGCCa--UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 136995 0.67 0.864907
Target:  5'- uGGCAgguCGAUcguGCgGCCGG-AgAGCGCg -3'
miRNA:   3'- -CCGU---GCUGau-CGaCGGCCaUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 76419 0.67 0.864907
Target:  5'- cGGCGCGuGCagAGC-GCCGGcgccaugGCGGaCGCg -3'
miRNA:   3'- -CCGUGC-UGa-UCGaCGGCCa------UGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 23834 0.67 0.841332
Target:  5'- gGGC-CGGCUagggugGGCUcGCCGGgGCAG-GCc -3'
miRNA:   3'- -CCGuGCUGA------UCGA-CGGCCaUGUCgCG- -5'
23738 3' -56.1 NC_005261.1 + 29962 0.67 0.841332
Target:  5'- aGGCGCuAgaGGCgGCgCGGUGCgccgccGGCGCg -3'
miRNA:   3'- -CCGUGcUgaUCGaCG-GCCAUG------UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 115196 0.67 0.864907
Target:  5'- aGCACGGCccAGC-GCCcGUgcguccGCGGCGCg -3'
miRNA:   3'- cCGUGCUGa-UCGaCGGcCA------UGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.