miRNA display CGI


Results 81 - 100 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 125400 0.67 0.849391
Target:  5'- cGGUACGuuccggAGCgGCgCGG-GCGGCGCu -3'
miRNA:   3'- -CCGUGCuga---UCGaCG-GCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 44227 0.67 0.849391
Target:  5'- aGCGCGc---GCUGCUGGccgccCAGCGCg -3'
miRNA:   3'- cCGUGCugauCGACGGCCau---GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 50826 0.67 0.841332
Target:  5'- cGCGCGGCuUGGC-GCCGcGaGCuGGCGCc -3'
miRNA:   3'- cCGUGCUG-AUCGaCGGC-CaUG-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 29636 0.67 0.823794
Target:  5'- cGGCGCcGCU-GCcGCCGGUcggggacgccaugGCcGCGCa -3'
miRNA:   3'- -CCGUGcUGAuCGaCGGCCA-------------UGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 12425 0.67 0.849391
Target:  5'- aGGgGCGGCggagGGCUugcggcgucgGCCGcGU-CGGCGCc -3'
miRNA:   3'- -CCgUGCUGa---UCGA----------CGGC-CAuGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118042 0.67 0.841332
Target:  5'- cGGcCGCGACgcccgcGCUGgCGGccgcgGCAGCGg -3'
miRNA:   3'- -CC-GUGCUGau----CGACgGCCa----UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 76004 0.67 0.849391
Target:  5'- cGCugGACgcccUGGC-GCCGc-GCAGCGCc -3'
miRNA:   3'- cCGugCUG----AUCGaCGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 135193 0.67 0.849391
Target:  5'- cGCGCGG--AGCaugGCCGagGCGGCGCa -3'
miRNA:   3'- cCGUGCUgaUCGa--CGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 72466 0.67 0.824647
Target:  5'- aGCGCGGCgAGCgcgaGCgCGGc-CAGCGCc -3'
miRNA:   3'- cCGUGCUGaUCGa---CG-GCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 134441 0.67 0.841332
Target:  5'- -uCGCGG--GGCUGCUGGUGaaGGCGCu -3'
miRNA:   3'- ccGUGCUgaUCGACGGCCAUg-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 36905 0.67 0.822082
Target:  5'- aGGCGCGACcccGCgcuggGCCGGgACGuacuccggggcccuGCGCu -3'
miRNA:   3'- -CCGUGCUGau-CGa----CGGCCaUGU--------------CGCG- -5'
23738 3' -56.1 NC_005261.1 + 98027 0.67 0.824647
Target:  5'- aGGCugGAgacgccgcgguaCUGGCgGCCGcGgGCGGCGg -3'
miRNA:   3'- -CCGugCU------------GAUCGaCGGC-CaUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 76419 0.67 0.864907
Target:  5'- cGGCGCGuGCagAGC-GCCGGcgccaugGCGGaCGCg -3'
miRNA:   3'- -CCGUGC-UGa-UCGaCGGCCa------UGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 1506 0.67 0.841332
Target:  5'- cGGC-CGGC-AGCUcGUCGGgcgccagcucCAGCGCg -3'
miRNA:   3'- -CCGuGCUGaUCGA-CGGCCau--------GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 95910 0.67 0.864907
Target:  5'- cGCGCGGCgcGCUcacuCgCGGUccgACAGCGCc -3'
miRNA:   3'- cCGUGCUGauCGAc---G-GCCA---UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 105432 0.67 0.857252
Target:  5'- aGGUAgGuCUcGCUcgcGCC-GUACAGCGCg -3'
miRNA:   3'- -CCGUgCuGAuCGA---CGGcCAUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 90397 0.67 0.824647
Target:  5'- cGGCGgGGCUGGC-GCC----CGGCGCg -3'
miRNA:   3'- -CCGUgCUGAUCGaCGGccauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 9122 0.67 0.857252
Target:  5'- gGGCcgccGgGACUGGggGCgGGUGCAG-GCa -3'
miRNA:   3'- -CCG----UgCUGAUCgaCGgCCAUGUCgCG- -5'
23738 3' -56.1 NC_005261.1 + 5896 0.67 0.824647
Target:  5'- cGGCugG-CUAGCUcgGCCGGc-CGGCugGCu -3'
miRNA:   3'- -CCGugCuGAUCGA--CGGCCauGUCG--CG- -5'
23738 3' -56.1 NC_005261.1 + 1290 0.67 0.857252
Target:  5'- aGGC-CGGCggGGCUcccgucGCCGGcggcgGCAcGCGCu -3'
miRNA:   3'- -CCGuGCUGa-UCGA------CGGCCa----UGU-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.