miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 54839 0.83 0.14592
Target:  5'- gGGCAgGGCUAGCUGCCGGcgccGCAG-GCu -3'
miRNA:   3'- -CCGUgCUGAUCGACGGCCa---UGUCgCG- -5'
23738 3' -56.1 NC_005261.1 + 71200 0.82 0.15761
Target:  5'- gGGCGCGGCcAGCUGCgcgaUGGUGCGcGCGCg -3'
miRNA:   3'- -CCGUGCUGaUCGACG----GCCAUGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 38520 0.82 0.17014
Target:  5'- aGGCGCGcGCUGGCUgcgcgcGCCGGgcACAGCGCc -3'
miRNA:   3'- -CCGUGC-UGAUCGA------CGGCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 129204 0.81 0.188228
Target:  5'- uGGCGCaGCUGcuuCUGCUGGUGCGGCGCc -3'
miRNA:   3'- -CCGUGcUGAUc--GACGGCCAUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 101205 0.8 0.218523
Target:  5'- cGC-CGACUccAGCUGCCGccGCAGCGCg -3'
miRNA:   3'- cCGuGCUGA--UCGACGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 45630 0.8 0.218523
Target:  5'- cGGCGCGGCgGGCccgcGCCGGaGCAGUGCc -3'
miRNA:   3'- -CCGUGCUGaUCGa---CGGCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 1696 0.79 0.252887
Target:  5'- cGGCAgcACgcGCUGCCGGUACucGCGCg -3'
miRNA:   3'- -CCGUgcUGauCGACGGCCAUGu-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 118931 0.78 0.291575
Target:  5'- gGGCGCGGCgccGCgcgGCUGGccGCGGCGCa -3'
miRNA:   3'- -CCGUGCUGau-CGa--CGGCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 50180 0.78 0.291575
Target:  5'- gGGCACcGCcgcAGCaGCCGGUGCAGCaGCg -3'
miRNA:   3'- -CCGUGcUGa--UCGaCGGCCAUGUCG-CG- -5'
23738 3' -56.1 NC_005261.1 + 98235 0.78 0.291575
Target:  5'- gGGCAuCGAUUuccGCgGcCCGGUGCGGCGCg -3'
miRNA:   3'- -CCGU-GCUGAu--CGaC-GGCCAUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 101138 0.78 0.271678
Target:  5'- cGCGCGA--GGCUGCCGcGcgGCGGCGCg -3'
miRNA:   3'- cCGUGCUgaUCGACGGC-Ca-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 32207 0.78 0.271678
Target:  5'- uGGCGCccGACgAGCUGCCGGccGCGGCGg -3'
miRNA:   3'- -CCGUG--CUGaUCGACGGCCa-UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 31826 0.77 0.342376
Target:  5'- cGGCGCGcGCUGGCgcgcgccgUGCUGGccucGCGGCGCg -3'
miRNA:   3'- -CCGUGC-UGAUCG--------ACGGCCa---UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 53570 0.77 0.342376
Target:  5'- aGGCGC-ACUAGCgGCCGcGggccgGCGGCGCc -3'
miRNA:   3'- -CCGUGcUGAUCGaCGGC-Ca----UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 68136 0.77 0.334742
Target:  5'- cGGCGCGGCgaccGCgccgugGCCGGcUACAcGCGCg -3'
miRNA:   3'- -CCGUGCUGau--CGa-----CGGCC-AUGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 105261 0.77 0.319851
Target:  5'- cGCGCGACaGGCUcGgCGGgcgGCAGCGCc -3'
miRNA:   3'- cCGUGCUGaUCGA-CgGCCa--UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 98915 0.77 0.312594
Target:  5'- cGGguCGGCggggucGGCUGCgGGggGCAGCGCg -3'
miRNA:   3'- -CCguGCUGa-----UCGACGgCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 69508 0.77 0.312594
Target:  5'- cGCcgGCGGCgGGCUGCCGGaGCuGGCGCg -3'
miRNA:   3'- cCG--UGCUGaUCGACGGCCaUG-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 59434 0.76 0.358017
Target:  5'- cGGCcCGGCaGGC-GCCGGcaGCAGCGCg -3'
miRNA:   3'- -CCGuGCUGaUCGaCGGCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118828 0.76 0.366023
Target:  5'- gGGCGCGGCa--CUGCCGcucUGCGGCGCg -3'
miRNA:   3'- -CCGUGCUGaucGACGGCc--AUGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.