Results 21 - 40 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23738 | 3' | -56.1 | NC_005261.1 | + | 29584 | 0.76 | 0.374152 |
Target: 5'- cGGCGCGuGCagGGCUGCCGGggccACAGCu- -3' miRNA: 3'- -CCGUGC-UGa-UCGACGGCCa---UGUCGcg -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 118828 | 0.76 | 0.366023 |
Target: 5'- gGGCGCGGCa--CUGCCGcucUGCGGCGCg -3' miRNA: 3'- -CCGUGCUGaucGACGGCc--AUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 59434 | 0.76 | 0.358017 |
Target: 5'- cGGCcCGGCaGGC-GCCGGcaGCAGCGCg -3' miRNA: 3'- -CCGuGCUGaUCGaCGGCCa-UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 32154 | 0.76 | 0.353272 |
Target: 5'- cGGCGCGccGCU-GCgGCCGGUguaccuggccugcggGCGGCGCg -3' miRNA: 3'- -CCGUGC--UGAuCGaCGGCCA---------------UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 90037 | 0.75 | 0.434368 |
Target: 5'- aGCGgGGCUuccuGCUGCCGGacagccaGCGGCGCc -3' miRNA: 3'- cCGUgCUGAu---CGACGGCCa------UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 30334 | 0.75 | 0.434368 |
Target: 5'- cGGCGCGGCUGGCgGCCGcGcucGCGGCc- -3' miRNA: 3'- -CCGUGCUGAUCGaCGGC-Ca--UGUCGcg -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 4405 | 0.75 | 0.434368 |
Target: 5'- cGGCgGCGGCgcGCUGCCGGgcCAG-GCc -3' miRNA: 3'- -CCG-UGCUGauCGACGGCCauGUCgCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 120002 | 0.75 | 0.425423 |
Target: 5'- gGGCGcCGGCUAcGCgGCCGuGUGCcGCGCc -3' miRNA: 3'- -CCGU-GCUGAU-CGaCGGC-CAUGuCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 126939 | 0.75 | 0.416589 |
Target: 5'- aGCGCGGCcaggGGC-GCCGGgcgcgggggcgGCAGCGCg -3' miRNA: 3'- cCGUGCUGa---UCGaCGGCCa----------UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 121816 | 0.75 | 0.407867 |
Target: 5'- uGGCugGGCUcugcgGGCcGCCGcgGCGGCGCa -3' miRNA: 3'- -CCGugCUGA-----UCGaCGGCcaUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 103872 | 0.75 | 0.399261 |
Target: 5'- cGGCGgGGCggcGCcGCCGG-GCGGCGCg -3' miRNA: 3'- -CCGUgCUGau-CGaCGGCCaUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 98196 | 0.75 | 0.390772 |
Target: 5'- gGGCGCGGCgggcAGCgggcGCCGccacgGCAGCGCg -3' miRNA: 3'- -CCGUGCUGa---UCGa---CGGCca---UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 134198 | 0.74 | 0.484461 |
Target: 5'- uGGCGCGGCUcggcgcgcgggucgcGGCgGCCGG--CAGCGUc -3' miRNA: 3'- -CCGUGCUGA---------------UCGaCGGCCauGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 66593 | 0.74 | 0.480653 |
Target: 5'- uGCACGuugcGCgcgAGCUGCUGG-AUGGCGCg -3' miRNA: 3'- cCGUGC----UGa--UCGACGGCCaUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 10507 | 0.74 | 0.471199 |
Target: 5'- cGCGCGGCcgccGCUGCgGGccccGCGGCGCg -3' miRNA: 3'- cCGUGCUGau--CGACGgCCa---UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 5514 | 0.74 | 0.471199 |
Target: 5'- cGGCAgCGGCggcgaGGCcGCCGGcuuCGGCGCg -3' miRNA: 3'- -CCGU-GCUGa----UCGaCGGCCau-GUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 77045 | 0.74 | 0.452579 |
Target: 5'- cGCGCGGCccucGGCgaccgcgccugGCCGGUGCcGCGCg -3' miRNA: 3'- cCGUGCUGa---UCGa----------CGGCCAUGuCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 64881 | 0.73 | 0.499833 |
Target: 5'- aGCgGCGGCgggAGC-GCCGGguccaGCAGCGCg -3' miRNA: 3'- cCG-UGCUGa--UCGaCGGCCa----UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 95604 | 0.73 | 0.499833 |
Target: 5'- cGCAcCGGCcGGCUGCUGG-ACcGCGCg -3' miRNA: 3'- cCGU-GCUGaUCGACGGCCaUGuCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 97733 | 0.73 | 0.499833 |
Target: 5'- gGGCuaACGGCUGGCagggGCgGGgcgggcucgGCGGCGCg -3' miRNA: 3'- -CCG--UGCUGAUCGa---CGgCCa--------UGUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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